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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
3871 A_BomoMSG_c14146_g1_i1
1394bp
 3-ketoacyl-CoA_thiolase,_mitochondrial_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0003988 F acetyl-CoA C-acyltransferase activity
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0016747 F acyltransferase activity, transferring groups other than amino-acyl groups
GO:0044822 F RNA binding
GO:0070062 C extracellular exosome
GO:0071456 P cellular response to hypoxia
GO:1901029 P negative regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway
GO:1902109 P negative regulation of mitochondrial membrane permeability involved in apoptotic process
FPKM:37.71 TPM:19.62
3872 A_BomoMSG_c14146_g1_i2
1604bp
 3-ketoacyl-CoA_thiolase,_mitochondrial_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0003988 F acetyl-CoA C-acyltransferase activity
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0016747 F acyltransferase activity, transferring groups other than amino-acyl groups
GO:0044822 F RNA binding
GO:0070062 C extracellular exosome
GO:0071456 P cellular response to hypoxia
GO:1901029 P negative regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway
GO:1902109 P negative regulation of mitochondrial membrane permeability involved in apoptotic process
FPKM:48.48 TPM:25.22
3873 A_BomoMSG_c14147_g1_i1
776bp
 juvenile_hormone_acid_O-methyltransferase-like_[Bombyx_mori]
GO:0006718 P juvenile hormone biosynthetic process
GO:0008168 F methyltransferase activity
GO:0016740 F transferase activity
GO:0019010 F farnesoic acid O-methyltransferase activity
GO:0032259 P methylation
GO:0035049 F juvenile hormone acid methyltransferase activity
FPKM:3.16 TPM:1.64
3874 A_BomoMSG_c14148_g1_i1
1257bp
 prostaglandin_reductase_1_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0006693 P prostaglandin metabolic process
GO:0008270 F zinc ion binding
GO:0016491 F oxidoreductase activity
GO:0032440 F 2-alkenal reductase [NAD(P)+] activity
GO:0036132 F 13-prostaglandin reductase activity
GO:0047522 F 15-oxoprostaglandin 13-oxidase activity
GO:0055114 P obsolete oxidation-reduction process
FPKM:25.04 TPM:13.03
3875 A_BomoMSG_c14149_g1_i1
316bp
 PREDICTED:_uncharacterized_protein_LOC106140897_[Amyelois_transitella]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:1.81 TPM:0.94
3876 A_BomoMSG_c1414_g1_i1
343bp
FPKM:4.04 TPM:2.10
3877 A_BomoMSG_c14150_g1_i1
205bp
FPKM:1.02 TPM:0.53
3878 A_BomoMSG_c14151_g1_i1
1389bp
 bystin_[Bombyx_mori]
GO:0000462 P maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0001701 P in utero embryonic development
GO:0001825 P blastocyst formation
GO:0001829 P trophectodermal cell differentiation
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0008283 P cell population proliferation
GO:0016020 C membrane
GO:0042254 P ribosome biogenesis
GO:0043231 C intracellular membrane-bounded organelle
GO:0044822 F RNA binding
GO:0045177 C apical part of cell
FPKM:41.90 TPM:21.79
3879 A_BomoMSG_c14152_g1_i1
239bp
 fatty_acid_synthase_[Bombyx_mori]
GO:0001649 P osteoblast differentiation
GO:0003824 F catalytic activity
GO:0004312 F fatty acid synthase activity
GO:0004313 F [acyl-carrier-protein] S-acetyltransferase activity
GO:0004314 F [acyl-carrier-protein] S-malonyltransferase activity
GO:0004315 F 3-oxoacyl-[acyl-carrier-protein] synthase activity
GO:0004316 F 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity
GO:0004317 F 3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase activity
GO:0004319 F enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) activity
GO:0004320 F oleoyl-[acyl-carrier-protein] hydrolase activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006084 P acetyl-CoA metabolic process
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006633 P fatty acid biosynthetic process
GO:0008144 F obsolete drug binding
GO:0008152 P metabolic process
GO:0008610 P lipid biosynthetic process
GO:0009058 P biosynthetic process
GO:0016020 C membrane
GO:0016295 F myristoyl-[acyl-carrier-protein] hydrolase activity
GO:0016296 F palmitoyl-[acyl-carrier-protein] hydrolase activity
GO:0016297 F acyl-[acyl-carrier-protein] hydrolase activity
GO:0016491 F oxidoreductase activity
GO:0016740 F transferase activity
GO:0016787 F hydrolase activity
GO:0016788 F hydrolase activity, acting on ester bonds
GO:0016829 F lyase activity
GO:0019171 F 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity
GO:0030879 P mammary gland development
GO:0031177 F phosphopantetheine binding
GO:0035338 P long-chain fatty-acyl-CoA biosynthetic process
GO:0042470 C melanosome
GO:0042587 C glycogen granule
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0044822 F RNA binding
GO:0047117 F enoyl-[acyl-carrier-protein] reductase (NADPH, A-specific) activity
GO:0047451 F 3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
GO:0055114 P obsolete oxidation-reduction process
GO:0070062 C extracellular exosome
GO:0070402 F NADPH binding
GO:0071353 P cellular response to interleukin-4
FPKM:5.31 TPM:2.76
3880 A_BomoMSG_c14153_g1_i1
341bp
FPKM:3.77 TPM:1.96
3881 A_BomoMSG_c14154_g1_i1
530bp
 uncharacterized_protein_LOC110385351_[Bombyx_mori]
FPKM:6.31 TPM:3.28
3882 A_BomoMSG_c14155_g1_i1
321bp
FPKM:16.95 TPM:8.82
3883 A_BomoMSG_c14156_g1_i1
459bp
FPKM:7.18 TPM:3.74
3884 A_BomoMSG_c14158_g1_i1
292bp
FPKM:3.79 TPM:1.97
3885 A_BomoMSG_c14159_g1_i1
512bp
FPKM:1.16 TPM:0.60
3886 A_BomoMSG_c1415_g1_i1
313bp
 long-chain-fatty-acid--CoA_ligase_4_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001676 P long-chain fatty acid metabolic process
GO:0003824 F catalytic activity
GO:0004467 F long-chain fatty acid-CoA ligase activity
GO:0005524 F ATP binding
GO:0005739 C mitochondrion
GO:0005741 C mitochondrial outer membrane
GO:0005777 C peroxisome
GO:0005778 C peroxisomal membrane
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0005811 C lipid droplet
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006633 P fatty acid biosynthetic process
GO:0007420 P brain development
GO:0007584 P response to nutrient
GO:0008152 P metabolic process
GO:0014070 P response to organic cyclic compound
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016874 F ligase activity
GO:0019901 F protein kinase binding
GO:0019904 F protein domain specific binding
GO:0031090 C organelle membrane
GO:0034379 P very-low-density lipoprotein particle assembly
GO:0042998 P positive regulation of Golgi to plasma membrane protein transport
GO:0043231 C intracellular membrane-bounded organelle
GO:0044539 P long-chain fatty acid import into cell
GO:0048471 C perinuclear region of cytoplasm
GO:0051047 P positive regulation of secretion
GO:2001247 P positive regulation of phosphatidylcholine biosynthetic process
FPKM:3.68 TPM:1.91
3887 A_BomoMSG_c14160_g1_i1
531bp
 protein_hairless_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003714 F transcription corepressor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0007219 P Notch signaling pathway
GO:0007275 P multicellular organism development
GO:0008052 P sensory organ boundary specification
GO:0008586 P imaginal disc-derived wing vein morphogenesis
GO:0008587 P imaginal disc-derived wing margin morphogenesis
GO:0010941 P regulation of cell death
GO:0016360 P sensory organ precursor cell fate determination
GO:0035019 P somatic stem cell population maintenance
GO:0036335 P intestinal stem cell homeostasis
GO:0044719 P regulation of imaginal disc-derived wing size
GO:0045746 P negative regulation of Notch signaling pathway
GO:0046331 P lateral inhibition
GO:0048190 P wing disc dorsal/ventral pattern formation
GO:1903507 P negative regulation of nucleic acid-templated transcription
FPKM:5.03 TPM:2.62
3888 A_BomoMSG_c14161_g1_i1
1135bp
FPKM:2.74 TPM:1.42
3889 A_BomoMSG_c14162_g1_i1
538bp
 spidroin-1_[Bombyx_mori]
FPKM:2.01 TPM:1.04
3890 A_BomoMSG_c14163_g1_i1
499bp
 peptidoglycan_recognition_protein_precursor_[Bombyx_mori]
GO:0002376 P immune system process
GO:0008270 F zinc ion binding
GO:0008745 F N-acetylmuramoyl-L-alanine amidase activity
GO:0009253 P peptidoglycan catabolic process
GO:0042834 F peptidoglycan binding
GO:0045087 P innate immune response
FPKM:3.09 TPM:1.61
3891 A_BomoMSG_c14164_g1_i1
292bp
 dolichyl-diphosphooligosaccharide--protein_glycosyltransferase_subunit_4_[Bombyx_mori]
GO:0004579 F dolichyl-diphosphooligosaccharide-protein glycotransferase activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006487 P protein N-linked glycosylation
GO:0008250 C oligosaccharyltransferase complex
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:254.22 TPM:132.25
3892 A_BomoMSG_c14165_g1_i1
425bp
 target_of_rapamycin_isoform_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001558 P regulation of cell growth
GO:0001934 P positive regulation of protein phosphorylation
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006468 P protein phosphorylation
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007411 P axon guidance
GO:0007430 P terminal branching, open tracheal system
GO:0007520 P myoblast fusion
GO:0007525 P somatic muscle development
GO:0007584 P response to nutrient
GO:0008144 F obsolete drug binding
GO:0008340 P determination of adult lifespan
GO:0008406 P gonad development
GO:0009594 P detection of nutrient
GO:0016242 P negative regulation of macroautophagy
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0016773 F phosphotransferase activity, alcohol group as acceptor
GO:0030307 P positive regulation of cell growth
GO:0031931 C TORC1 complex
GO:0031932 C TORC2 complex
GO:0032456 P endocytic recycling
GO:0035264 P multicellular organism growth
GO:0040007 P growth
GO:0040018 P positive regulation of multicellular organism growth
GO:0042331 P phototaxis
GO:0043621 F protein self-association
GO:0045176 P apical protein localization
GO:0045793 P positive regulation of cell size
GO:0046622 P positive regulation of organ growth
GO:0048142 P germarium-derived cystoblast division
GO:0048813 P dendrite morphogenesis
GO:0051124 P synaptic assembly at neuromuscular junction
GO:0090070 P positive regulation of ribosome biogenesis
GO:2000331 P regulation of terminal button organization
GO:2000377 P regulation of reactive oxygen species metabolic process
GO:2001023 P regulation of response to drug
FPKM:1.53 TPM:0.79
3893 A_BomoMSG_c14165_g2_i1
276bp
 target_of_rapamycin_isoform_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001558 P regulation of cell growth
GO:0001934 P positive regulation of protein phosphorylation
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006468 P protein phosphorylation
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007411 P axon guidance
GO:0007430 P terminal branching, open tracheal system
GO:0007520 P myoblast fusion
GO:0007525 P somatic muscle development
GO:0007584 P response to nutrient
GO:0008144 F obsolete drug binding
GO:0008340 P determination of adult lifespan
GO:0008406 P gonad development
GO:0009594 P detection of nutrient
GO:0016242 P negative regulation of macroautophagy
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0016773 F phosphotransferase activity, alcohol group as acceptor
GO:0030307 P positive regulation of cell growth
GO:0031931 C TORC1 complex
GO:0031932 C TORC2 complex
GO:0032456 P endocytic recycling
GO:0035264 P multicellular organism growth
GO:0040007 P growth
GO:0040018 P positive regulation of multicellular organism growth
GO:0042331 P phototaxis
GO:0043621 F protein self-association
GO:0045176 P apical protein localization
GO:0045793 P positive regulation of cell size
GO:0046622 P positive regulation of organ growth
GO:0048142 P germarium-derived cystoblast division
GO:0048813 P dendrite morphogenesis
GO:0051124 P synaptic assembly at neuromuscular junction
GO:0090070 P positive regulation of ribosome biogenesis
GO:2000331 P regulation of terminal button organization
GO:2000377 P regulation of reactive oxygen species metabolic process
GO:2001023 P regulation of response to drug
FPKM:2.85 TPM:1.48
3894 A_BomoMSG_c14166_g1_i1
482bp
 protein_O-GlcNAcase_[Bombyx_mori]
FPKM:4.23 TPM:2.20
3895 A_BomoMSG_c14166_g1_i2
363bp
 protein_O-GlcNAcase_[Bombyx_mori]
FPKM:3.53 TPM:1.84
3896 A_BomoMSG_c14167_g1_i1
205bp
FPKM:2.04 TPM:1.06
3897 A_BomoMSG_c14167_g2_i1
534bp
FPKM:4.37 TPM:2.27
3898 A_BomoMSG_c14168_g1_i1
400bp
 pol_protein_[Danaus_plexippus_plexippus]
FPKM:2.40 TPM:1.25
3899 A_BomoMSG_c14169_g1_i1
718bp
 NTF2-like_export_factor_1_[Bombyx_mori]
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006406 P mRNA export from nucleus
GO:0006408 P snRNA export from nucleus
GO:0006409 P tRNA export from nucleus
GO:0006611 P protein export from nucleus
GO:0006810 P transport
GO:0009267 P cellular response to starvation
GO:0015031 P protein transport
GO:0016973 P poly(A)+ mRNA export from nucleus
GO:0045824 P negative regulation of innate immune response
GO:0050829 P defense response to Gram-negative bacterium
GO:0051028 P mRNA transport
FPKM:23.62 TPM:12.29
3900 A_BomoMSG_c1416_g1_i1
393bp
FPKM:1.73 TPM:0.90
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