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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
3811 A_BomoMSG_c14087_g1_i2
385bp
 trafficking_protein_particle_complex_subunit_2-like_protein_[Bombyx_mori]
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0016192 P vesicle-mediated transport
GO:0048471 C perinuclear region of cytoplasm
FPKM:5.74 TPM:2.99
3812 A_BomoMSG_c14088_g1_i1
406bp
 39S_ribosomal_protein_L34,_mitochondrial_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0003735 F structural constituent of ribosome
GO:0005575 C cellular_component
GO:0005622 C intracellular anatomical structure
GO:0005739 C mitochondrion
GO:0005762 C mitochondrial large ribosomal subunit
GO:0005840 C ribosome
GO:0006412 P translation
GO:0008150 P biological_process
GO:0030529 C ribonucleoprotein complex
GO:0032543 P mitochondrial translation
FPKM:28.80 TPM:14.98
3813 A_BomoMSG_c14089_g1_i1
413bp
 WD_repeat_domain_phosphoinositide-interacting_protein_4_[Bombyx_mori]
GO:0000045 P autophagosome assembly
GO:0000422 P autophagy of mitochondrion
GO:0005829 C cytosol
GO:0006497 P protein lipidation
GO:0006914 P autophagy
GO:0019898 C extrinsic component of membrane
GO:0032266 F phosphatidylinositol-3-phosphate binding
GO:0034045 C phagophore assembly site membrane
GO:0034497 P protein localization to phagophore assembly site
GO:0044804 P autophagy of nucleus
GO:0080025 F phosphatidylinositol-3,5-bisphosphate binding
FPKM:3.19 TPM:1.66
3814 A_BomoMSG_c14091_g1_i1
545bp
FPKM:4.10 TPM:2.13
3815 A_BomoMSG_c14093_g1_i1
530bp
FPKM:9.77 TPM:5.09
3816 A_BomoMSG_c14095_g1_i1
239bp
FPKM:5.97 TPM:3.11
3817 A_BomoMSG_c14096_g1_i1
306bp
FPKM:4.61 TPM:2.40
3818 A_BomoMSG_c14097_g1_i1
265bp
FPKM:4.15 TPM:2.16
3819 A_BomoMSG_c14098_g1_i1
252bp
FPKM:1.75 TPM:0.91
3820 A_BomoMSG_c14099_g1_i1
781bp
 arfaptin-2,_partial_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0005829 C cytosol
GO:0006886 P intracellular protein transport
GO:0019904 F protein domain specific binding
GO:0032588 C trans-Golgi network membrane
GO:0034315 P regulation of Arp2/3 complex-mediated actin nucleation
GO:0050708 P regulation of protein secretion
GO:0070273 F phosphatidylinositol-4-phosphate binding
FPKM:2.94 TPM:1.53
3821 A_BomoMSG_c1409_g1_i1
368bp
 afadin_isoform_X3_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0005911 C cell-cell junction
GO:0005912 C adherens junction
GO:0007155 P cell adhesion
GO:0007165 P signal transduction
GO:0007267 P cell-cell signaling
GO:0008022 F protein C-terminus binding
GO:0017016 F small GTPase binding
GO:0030054 C cell junction
GO:0034332 P adherens junction organization
GO:0043547 P positive regulation of GTPase activity
GO:0090557 P establishment of endothelial intestinal barrier
FPKM:2.20 TPM:1.14
3822 A_BomoMSG_c140_g1_i1
265bp
 zinc_finger_protein_808_[Bombyx_mori]
FPKM:0.00 TPM:0.00
3823 A_BomoMSG_c140_g1_i2
324bp
 zinc_finger_protein_808_[Bombyx_mori]
FPKM:0.00 TPM:0.00
3824 A_BomoMSG_c140_g1_i3
428bp
 zinc_finger_protein_808_[Bombyx_mori]
FPKM:1.73 TPM:0.90
3825 A_BomoMSG_c14100_g1_i1
449bp
FPKM:4.41 TPM:2.29
3826 A_BomoMSG_c14101_g1_i1
672bp
 DNA_polymerase_accessory_subunit_isoform_X1_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003887 F DNA-directed DNA polymerase activity
GO:0005739 C mitochondrion
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0071897 P DNA biosynthetic process
FPKM:7.46 TPM:3.88
3827 A_BomoMSG_c14102_g1_i1
761bp
 uncharacterized_protein_LOC101742841_isoform_X1_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
FPKM:2.65 TPM:1.38
3828 A_BomoMSG_c14103_g1_i1
211bp
FPKM:1.87 TPM:0.97
3829 A_BomoMSG_c14104_g1_i1
331bp
 putative_beta1-tubulin,_partial_[Danaus_plexippus_plexippus]
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005200 F structural constituent of cytoskeleton
GO:0005525 F GTP binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0007017 P microtubule-based process
GO:0008152 P metabolic process
FPKM:4.64 TPM:2.41
3830 A_BomoMSG_c14105_g1_i1
300bp
FPKM:18.78 TPM:9.77
3831 A_BomoMSG_c14106_g1_i1
451bp
FPKM:8.36 TPM:4.35
3832 A_BomoMSG_c14108_g1_i1
529bp
FPKM:2.69 TPM:1.40
3833 A_BomoMSG_c14109_g1_i1
1984bp
 choline-phosphate_cytidylyltransferase_B_isoform_X1_[Bombyx_mori]
GO:0001541 P ovarian follicle development
GO:0003824 F catalytic activity
GO:0004105 F choline-phosphate cytidylyltransferase activity
GO:0005783 C endoplasmic reticulum
GO:0006629 P lipid metabolic process
GO:0006656 P phosphatidylcholine biosynthetic process
GO:0006657 P CDP-choline pathway
GO:0007283 P spermatogenesis
GO:0008654 P phospholipid biosynthetic process
GO:0009058 P biosynthetic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
FPKM:35.42 TPM:18.43
3834 A_BomoMSG_c14109_g1_i2
1954bp
 choline-phosphate_cytidylyltransferase_B_isoform_X2_[Bombyx_mori]
GO:0001541 P ovarian follicle development
GO:0003824 F catalytic activity
GO:0004105 F choline-phosphate cytidylyltransferase activity
GO:0005783 C endoplasmic reticulum
GO:0006629 P lipid metabolic process
GO:0006656 P phosphatidylcholine biosynthetic process
GO:0006657 P CDP-choline pathway
GO:0007283 P spermatogenesis
GO:0008654 P phospholipid biosynthetic process
GO:0009058 P biosynthetic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
FPKM:33.90 TPM:17.64
3835 A_BomoMSG_c1410_g1_i1
395bp
FPKM:3.43 TPM:1.78
3836 A_BomoMSG_c14110_g1_i1
459bp
FPKM:1.75 TPM:0.91
3837 A_BomoMSG_c14111_g1_i1
625bp
 tetratricopeptide_repeat_protein_7B_[Bombyx_mori]
FPKM:1.77 TPM:0.92
3838 A_BomoMSG_c14112_g1_i1
1423bp
 PREDICTED:_eukaryotic_translation_initiation_factor_1A,_X-chromosomal_[Papilio_polytes]
GO:0003723 F RNA binding
GO:0003743 F translation initiation factor activity
GO:0006412 P translation
GO:0006413 P translational initiation
GO:0044822 F RNA binding
FPKM:84.09 TPM:43.75
3839 A_BomoMSG_c14113_g1_i1
684bp
 enhancer_of_polycomb_homolog_1,_partial_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0004402 F histone acetyltransferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0016568 P chromatin organization
GO:0031965 C nuclear membrane
GO:0032777 C Piccolo NuA4 histone acetyltransferase complex
GO:0035267 C NuA4 histone acetyltransferase complex
GO:0035886 P vascular associated smooth muscle cell differentiation
GO:0040008 P regulation of growth
GO:0043967 P histone H4 acetylation
GO:0043968 P histone H2A acetylation
GO:0045814 P negative regulation of gene expression, epigenetic
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
FPKM:2.47 TPM:1.28
3840 A_BomoMSG_c14114_g1_i1
532bp
FPKM:2.35 TPM:1.22
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