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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
3751 A_BomoMSG_c14031_g1_i1
519bp
FPKM:4.38 TPM:2.28
3752 A_BomoMSG_c14032_g1_i1
668bp
 eIF-2-alpha_kinase_GCN2_isoform_X2_[Bombyx_mori]
GO:0000049 F tRNA binding
GO:0000166 F nucleotide binding
GO:0002230 P positive regulation of defense response to virus by host
GO:0002250 P adaptive immune response
GO:0002286 P T cell activation involved in immune response
GO:0002376 P immune system process
GO:0002821 P positive regulation of adaptive immune response
GO:0003723 F RNA binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004694 F eukaryotic translation initiation factor 2alpha kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0005844 C polysome
GO:0006417 P regulation of translation
GO:0006446 P regulation of translational initiation
GO:0006468 P protein phosphorylation
GO:0007049 P cell cycle
GO:0007050 P regulation of cell cycle
GO:0007399 P nervous system development
GO:0007612 P learning
GO:0007616 P long-term memory
GO:0009267 P cellular response to starvation
GO:0010628 P positive regulation of gene expression
GO:0010998 P regulation of translational initiation by eIF2 alpha phosphorylation
GO:0016032 P viral process
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0017148 P negative regulation of translation
GO:0019081 P viral translation
GO:0022626 C cytosolic ribosome
GO:0030154 P cell differentiation
GO:0030968 P endoplasmic reticulum unfolded protein response
GO:0032057 P negative regulation of translational initiation in response to stress
GO:0032792 P negative regulation of CREB transcription factor activity
GO:0034198 P cellular response to amino acid starvation
GO:0034644 P cellular response to UV
GO:0034976 P response to endoplasmic reticulum stress
GO:0036492 P eiF2alpha phosphorylation in response to endoplasmic reticulum stress
GO:0039520 P induction by virus of host autophagy
GO:0043558 P regulation of translational initiation in response to stress
GO:0044828 P negative regulation by host of viral genome replication
GO:0045665 P negative regulation of neuron differentiation
GO:0045947 P negative regulation of translational initiation
GO:0046777 P protein autophosphorylation
GO:0051607 P defense response to virus
GO:0060259 P regulation of feeding behavior
GO:0060733 P GCN2-mediated signaling
GO:0070417 P cellular response to cold
GO:0071074 F eukaryotic initiation factor eIF2 binding
GO:0071264 P positive regulation of translational initiation in response to starvation
GO:1900273 P positive regulation of long-term synaptic potentiation
GO:1990138 P neuron projection extension
GO:1990253 P cellular response to leucine starvation
FPKM:3.24 TPM:1.68
3753 A_BomoMSG_c14033_g1_i1
273bp
FPKM:0.00 TPM:0.00
3754 A_BomoMSG_c14033_g1_i2
264bp
FPKM:0.52 TPM:0.27
3755 A_BomoMSG_c14034_g1_i1
260bp
FPKM:5.96 TPM:3.10
3756 A_BomoMSG_c14036_g1_i1
467bp
FPKM:1.89 TPM:0.98
3757 A_BomoMSG_c14037_g1_i1
321bp
 uncharacterized_protein_LOC101743413_isoform_X3_[Bombyx_mori]
FPKM:3.15 TPM:1.64
3758 A_BomoMSG_c14037_g1_i2
237bp
 uncharacterized_protein_LOC101743413_isoform_X3_[Bombyx_mori]
FPKM:0.00 TPM:0.00
3759 A_BomoMSG_c14038_g1_i1
489bp
 PREDICTED:_LIM_domain-containing_protein_jub,_partial_[Papilio_polytes]
GO:0000242 C pericentriolar material
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005911 C cell-cell junction
GO:0005912 C adherens junction
GO:0007067 P mitotic cell cycle
GO:0008270 F zinc ion binding
GO:0030054 C cell junction
GO:0030707 P ovarian follicle cell development
GO:0035329 P hippo signaling
GO:0045177 C apical part of cell
GO:0045179 C apical cortex
GO:0045572 P positive regulation of imaginal disc growth
GO:0046622 P positive regulation of organ growth
GO:0046872 F metal ion binding
GO:0071539 P protein localization to centrosome
FPKM:2.47 TPM:1.29
3760 A_BomoMSG_c14039_g1_i1
230bp
FPKM:8.06 TPM:4.19
3761 A_BomoMSG_c1403_g1_i1
508bp
FPKM:1.67 TPM:0.87
3762 A_BomoMSG_c14040_g1_i1
419bp
FPKM:6.46 TPM:3.36
3763 A_BomoMSG_c14042_g1_i1
2497bp
 protein_SDA1_homolog_[Bombyx_mori]
GO:0000055 P ribosomal large subunit export from nucleus
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006810 P transport
GO:0015031 P protein transport
GO:0030036 P actin cytoskeleton organization
GO:0042254 P ribosome biogenesis
GO:0042273 P ribosomal large subunit biogenesis
FPKM:44.62 TPM:23.21
3764 A_BomoMSG_c14044_g1_i1
338bp
FPKM:1.91 TPM:1.00
3765 A_BomoMSG_c14046_g1_i1
509bp
 uncharacterized_protein_LOC101746806_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0008543 P fibroblast growth factor receptor signaling pathway
GO:0043484 P regulation of RNA splicing
GO:0044822 F RNA binding
FPKM:3.67 TPM:1.91
3766 A_BomoMSG_c14047_g1_i1
208bp
FPKM:7.82 TPM:4.07
3767 A_BomoMSG_c14049_g1_i1
787bp
FPKM:23.03 TPM:11.98
3768 A_BomoMSG_c14050_g1_i1
270bp
FPKM:2.99 TPM:1.55
3769 A_BomoMSG_c14052_g1_i1
425bp
 putative_nuclease_HARBI1,_partial_[Bombyx_mori]
GO:0004518 F nuclease activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:3.99 TPM:2.08
3770 A_BomoMSG_c14052_g1_i2
599bp
 putative_nuclease_HARBI1,_partial_[Bombyx_mori]
GO:0004518 F nuclease activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:0.36 TPM:0.19
3771 A_BomoMSG_c14053_g1_i1
215bp
FPKM:4.42 TPM:2.30
3772 A_BomoMSG_c14054_g1_i1
1729bp
 deoxyhypusine_hydroxylase/monooxygenase_[Bombyx_mori]
GO:0004497 F monooxygenase activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0007423 P sensory organ development
GO:0007451 P dorsal/ventral lineage restriction, imaginal disc
GO:0008283 P cell population proliferation
GO:0008612 P peptidyl-lysine modification to peptidyl-hypusine
GO:0010508 P positive regulation of autophagy
GO:0016020 C membrane
GO:0016049 P cell growth
GO:0016491 F oxidoreductase activity
GO:0019135 F deoxyhypusine monooxygenase activity
GO:0042406 C extrinsic component of endoplasmic reticulum membrane
GO:0046872 F metal ion binding
GO:0055114 P obsolete oxidation-reduction process
FPKM:60.06 TPM:31.25
3773 A_BomoMSG_c14055_g1_i1
453bp
FPKM:4.94 TPM:2.57
3774 A_BomoMSG_c14056_g1_i1
450bp
FPKM:7.39 TPM:3.84
3775 A_BomoMSG_c14057_g1_i1
526bp
FPKM:0.64 TPM:0.33
3776 A_BomoMSG_c14058_g1_i1
201bp
FPKM:2.18 TPM:1.13
3777 A_BomoMSG_c14059_g1_i1
263bp
 probable_multidrug_resistance-associated_protein_lethal(2)03659_[Bombyx_mori]
FPKM:2.64 TPM:1.37
3778 A_BomoMSG_c1405_g1_i1
337bp
FPKM:3.21 TPM:1.67
3779 A_BomoMSG_c14060_g1_i1
686bp
FPKM:2.23 TPM:1.16
3780 A_BomoMSG_c14061_g1_i1
320bp
 neuroligin-2_isoform_X2_[Bombyx_mori]
FPKM:3.17 TPM:1.65
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