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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
3721 A_BomoMSG_c14005_g1_i1
435bp
FPKM:1.26 TPM:0.66
3722 A_BomoMSG_c14005_g1_i2
370bp
FPKM:0.00 TPM:0.00
3723 A_BomoMSG_c14006_g1_i1
402bp
FPKM:4.76 TPM:2.47
3724 A_BomoMSG_c14007_g1_i1
607bp
FPKM:3.80 TPM:1.98
3725 A_BomoMSG_c14008_g1_i1
483bp
 troponin_T_transcript_variant_B,_partial_[Bombyx_mandarina]
GO:0005509 F calcium ion binding
GO:0005523 F tropomyosin binding
GO:0005861 C troponin complex
GO:0005865 C striated muscle thin filament
GO:0006874 P cellular calcium ion homeostasis
GO:0006937 P regulation of muscle contraction
GO:0007005 P mitochondrion organization
GO:0007498 P mesoderm development
GO:0030239 P myofibril assembly
GO:0030240 P skeletal muscle thin filament assembly
GO:0045214 P sarcomere organization
GO:0046716 P muscle cell cellular homeostasis
GO:0048644 P muscle organ morphogenesis
FPKM:1.98 TPM:1.03
3726 A_BomoMSG_c14009_g1_i1
440bp
FPKM:7.85 TPM:4.09
3727 A_BomoMSG_c1400_g1_i1
515bp
 zinc_finger_protein_267_isoform_X3_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0001666 P response to hypoxia
GO:0001822 P kidney development
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007576 P nucleolar fragmentation
GO:0007605 P sensory perception of sound
GO:0046872 F metal ion binding
GO:0051593 P response to folic acid
FPKM:2.13 TPM:1.11
3728 A_BomoMSG_c14010_g1_i1
351bp
FPKM:2.68 TPM:1.40
3729 A_BomoMSG_c14011_g1_i1
322bp
 GRIP_and_coiled-coil_domain-containing_protein_2_[Bombyx_mori]
FPKM:3.14 TPM:1.63
3730 A_BomoMSG_c14012_g1_i1
210bp
FPKM:0.00 TPM:0.00
3731 A_BomoMSG_c14012_g1_i2
367bp
FPKM:2.76 TPM:1.44
3732 A_BomoMSG_c14014_g1_i1
236bp
 hypothetical_protein_KGM_208273_[Danaus_plexippus_plexippus]
FPKM:8.22 TPM:4.28
3733 A_BomoMSG_c14015_g1_i1
359bp
FPKM:5.74 TPM:2.98
3734 A_BomoMSG_c14017_g1_i1
453bp
 nuclear_factor_NF-kappa-B_p110_subunit_isoform_2_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0000981 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0002230 P positive regulation of defense response to virus by host
GO:0002376 P immune system process
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005719 C euchromatin
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006954 P inflammatory response
GO:0006955 P immune response
GO:0006963 P positive regulation of antibacterial peptide biosynthetic process
GO:0006964 P positive regulation of biosynthetic process of antibacterial peptides active against Gram-negative bacteria
GO:0006967 P positive regulation of antifungal peptide biosynthetic process
GO:0006974 P cellular response to DNA damage stimulus
GO:0007165 P signal transduction
GO:0007249 P I-kappaB kinase/NF-kappaB signaling
GO:0008063 P Toll signaling pathway
GO:0009617 P response to bacterium
GO:0010628 P positive regulation of gene expression
GO:0019233 P sensory perception of pain
GO:0033256 C I-kappaB/NF-kappaB complex
GO:0034097 P response to cytokine
GO:0034198 P cellular response to amino acid starvation
GO:0038061 P NIK/NF-kappaB signaling
GO:0043565 F sequence-specific DNA binding
GO:0045087 P innate immune response
GO:0045088 P regulation of innate immune response
GO:0045089 P positive regulation of innate immune response
GO:0045429 P positive regulation of nitric oxide biosynthetic process
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048813 P dendrite morphogenesis
GO:0048935 P peripheral nervous system neuron development
GO:0050829 P defense response to Gram-negative bacterium
GO:0051607 P defense response to virus
GO:0061057 P peptidoglycan recognition protein signaling pathway
GO:2000647 P negative regulation of stem cell proliferation
FPKM:3.96 TPM:2.06
3735 A_BomoMSG_c14018_g1_i1
224bp
FPKM:2.36 TPM:1.23
3736 A_BomoMSG_c14019_g1_i1
459bp
FPKM:4.61 TPM:2.40
3737 A_BomoMSG_c14019_g1_i2
470bp
FPKM:4.17 TPM:2.17
3738 A_BomoMSG_c1401_g1_i1
213bp
FPKM:0.91 TPM:0.47
3739 A_BomoMSG_c14021_g1_i1
216bp
FPKM:3.49 TPM:1.82
3740 A_BomoMSG_c14022_g1_i1
351bp
 uncharacterized_protein_LOC101744043_isoform_X2_[Bombyx_mori]
FPKM:2.68 TPM:1.40
3741 A_BomoMSG_c14023_g1_i1
719bp
FPKM:5.58 TPM:2.90
3742 A_BomoMSG_c14024_g1_i1
215bp
FPKM:3.54 TPM:1.84
3743 A_BomoMSG_c14025_g1_i1
211bp
FPKM:0.94 TPM:0.49
3744 A_BomoMSG_c14026_g1_i1
532bp
 Arginine-glutamic_acid_dipeptide_repeats_protein_[Papilio_machaon]
GO:0000118 C histone deacetylase complex
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0001105 F transcription coactivator activity
GO:0001106 F transcription corepressor activity
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006607 P NLS-bearing protein import into nucleus
GO:0007275 P multicellular organism development
GO:0008267 F poly-glutamine tract binding
GO:0008270 F zinc ion binding
GO:0021549 P cerebellum development
GO:0021691 P cerebellar Purkinje cell layer maturation
GO:0021930 P cerebellar granule cell precursor proliferation
GO:0021942 P radial glia guided migration of Purkinje cell
GO:0043565 F sequence-specific DNA binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0048755 P branching morphogenesis of a nerve
GO:0048813 P dendrite morphogenesis
FPKM:2.82 TPM:1.47
3745 A_BomoMSG_c14026_g2_i1
254bp
FPKM:2.86 TPM:1.49
3746 A_BomoMSG_c14027_g1_i1
613bp
 apyrase_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005576 C extracellular region
GO:0009166 P nucleotide catabolic process
GO:0016787 F hydrolase activity
GO:0016788 F hydrolase activity, acting on ester bonds
GO:0046872 F metal ion binding
FPKM:4.40 TPM:2.29
3747 A_BomoMSG_c14028_g1_i1
1737bp
 microtubule-associated_protein_RP/EB_family_member_3_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0005881 C cytoplasmic microtubule
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0008017 F microtubule binding
GO:0015630 C microtubule cytoskeleton
GO:0030496 C midbody
GO:0035371 C microtubule plus-end
GO:0045737 P positive regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0048471 C perinuclear region of cytoplasm
GO:0051301 P cell division
GO:1903033 P positive regulation of microtubule plus-end binding
FPKM:14.40 TPM:7.49
3748 A_BomoMSG_c14028_g1_i2
2251bp
 microtubule-associated_protein_RP/EB_family_member_3_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0005881 C cytoplasmic microtubule
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0008017 F microtubule binding
GO:0015630 C microtubule cytoskeleton
GO:0030496 C midbody
GO:0035371 C microtubule plus-end
GO:0045737 P positive regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0048471 C perinuclear region of cytoplasm
GO:0051301 P cell division
GO:1903033 P positive regulation of microtubule plus-end binding
FPKM:8.20 TPM:4.27
3749 A_BomoMSG_c14028_g1_i3
2356bp
 microtubule-associated_protein_RP/EB_family_member_3_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0005881 C cytoplasmic microtubule
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0008017 F microtubule binding
GO:0015630 C microtubule cytoskeleton
GO:0030496 C midbody
GO:0035371 C microtubule plus-end
GO:0045737 P positive regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0048471 C perinuclear region of cytoplasm
GO:0051301 P cell division
GO:1903033 P positive regulation of microtubule plus-end binding
FPKM:93.77 TPM:48.78
3750 A_BomoMSG_c14030_g1_i1
738bp
 probable_Ras_GTPase-activating_protein_[Bombyx_mori]
GO:0002121 P inter-male aggressive behavior
GO:0005096 F GTPase activator activity
GO:0005737 C cytoplasm
GO:0007165 P signal transduction
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0031235 C intrinsic component of the cytoplasmic side of the plasma membrane
GO:0043087 P regulation of GTPase activity
GO:0043547 P positive regulation of GTPase activity
GO:0045179 C apical cortex
GO:0046580 P negative regulation of Ras protein signal transduction
FPKM:1.83 TPM:0.95
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