SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMSG_c13818_g1_i1
Scaffold_idBomo_Chr24
NCBI non-redundant
(nr)		small_nuclear_ribonucleoprotein_Sm_D1_[Bombyx_mori]
Ontology
GO:0000243 C commitment complex
GO:0000245 P spliceosomal complex assembly
GO:0000387 P spliceosomal snRNP assembly
GO:0002230 P positive regulation of defense response to virus by host
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005682 C U5 snRNP
GO:0005685 C U1 snRNP
GO:0005686 C U2 snRNP
GO:0005687 C U4 snRNP
GO:0005689 C U12-type spliceosomal complex
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0030529 C ribonucleoprotein complex
GO:0034709 C methylosome
GO:0034715 C pICln-Sm protein complex
GO:0034719 C SMN-Sm protein complex
GO:0044822 F RNA binding
GO:0071010 C prespliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
GO:0097526 C spliceosomal tri-snRNP complex
GO:0098779 P positive regulation of mitophagy in response to mitochondrial depolarization
GO:0098792 P xenophagy
Transcript
Level		FPKM:61.68 TPM:32.09
ORF EntryO_BomoMSG3533_complete:A_BomoMSG_c13818_g1_i1
Sequence
(Nucleotide)
CAAACGCTCGCGGCGCCATATTTTGTTTAGACTTTTGAGGTTAAGCCGTACCGACGCCGT
TATTGTTTTCACGATAAATTAGTTAATAAATCAAGCAGAATGAAACTCGTCAGGTTTTTA
ATGAAACTAAGCCACGAGACGGTCACTATAGAGTTGAAAAACGGCAGTGTCGTTCATGGA
ACAATTACCGGGGTGGATGTCGCTATGAACACACATTTAAAAGCCGTAAAAGTTACGTTA
AAAAATCGTGAAGAACTACAATTGGAGACCTTGAGTATACGCGGGAACAATATCCGATAT
TATCTACTTCCAGACAGTCTGCCTTTAGAGACTTTGTTGATCGACGACACTCCTAAAGGC
AAGGGCAAAAGGGAAGGATTTGCGCGCGGCGGCGGCGCCAGAGGTGGTCGTGGCAGAGGC
CGAGGTGGCCGCGGAGGCCCCAGAGGCGGTCGTGGAGGCCGAGGTCGCGGACGCCGGTAG
ATAAAAACCTAATTTTAAGCCAAACTTGATCACAGTAAGTGAGGTCTGATATTTGTGATT
GAATTAAATTTTCATGGTGTTTTTTATTCTACTAAGTAACAGTGTTCATGCTTAACACAA
TAATAAAACTACAATAATTACTTGCAAACTGTTATTAAAAAGTATTGTGGTCCTTTAGCC
TAAACAAAATGTTTTCCTGGACGACTTTTTTACACAGCGATGCAGGGTTCCTTGGGTCTT
GTAATTTAAAACATAAACTAGAGAATACATTAAATTGTAATTTAGTAAACATATTCCGTA
AAGATAAGTCAATAAATTGTATTGTGTAAGAAAAAAAAAA
(820 bp)

- SilkBase 1999-2023 -