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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
3391 A_BomoMSG_c13700_g1_i1
281bp
FPKM:10.96 TPM:5.70
3392 A_BomoMSG_c13701_g1_i1
362bp
 WASH_complex_subunit_4_isoform_X2_[Bombyx_mori]
GO:0005654 C nucleoplasm
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0006810 P transport
GO:0007032 P endosome organization
GO:0015031 P protein transport
GO:0016197 P endosomal transport
GO:0031083 C BLOC-1 complex
GO:0071203 C WASH complex
FPKM:7.63 TPM:3.97
3393 A_BomoMSG_c13702_g1_i1
356bp
 MAP7_domain-containing_protein_1_[Bombyx_mori]
FPKM:3.49 TPM:1.82
3394 A_BomoMSG_c13704_g1_i1
405bp
FPKM:1.65 TPM:0.86
3395 A_BomoMSG_c13705_g1_i1
561bp
FPKM:4.23 TPM:2.20
3396 A_BomoMSG_c13707_g1_i1
519bp
 uncharacterized_protein_LOC101746149_[Bombyx_mori]
GO:0005654 C nucleoplasm
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005747 C mitochondrial respiratory chain complex I
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0044822 F RNA binding
GO:0055114 P obsolete oxidation-reduction process
GO:0070469 C respirasome
FPKM:49.07 TPM:25.53
3397 A_BomoMSG_c13708_g1_i1
384bp
FPKM:7.68 TPM:4.00
3398 A_BomoMSG_c13709_g1_i1
330bp
FPKM:3.33 TPM:1.73
3399 A_BomoMSG_c13710_g1_i1
435bp
FPKM:5.26 TPM:2.73
3400 A_BomoMSG_c13711_g1_i1
251bp
FPKM:9.41 TPM:4.90
3401 A_BomoMSG_c13712_g1_i1
939bp
FPKM:65.57 TPM:34.11
3402 A_BomoMSG_c13713_g1_i1
683bp
FPKM:4.16 TPM:2.16
3403 A_BomoMSG_c13714_g1_i1
233bp
FPKM:5.67 TPM:2.95
3404 A_BomoMSG_c13716_g1_i1
369bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:2.46 TPM:1.28
3405 A_BomoMSG_c13717_g1_i1
502bp
FPKM:5.79 TPM:3.01
3406 A_BomoMSG_c13718_g1_i1
204bp
FPKM:0.00 TPM:0.00
3407 A_BomoMSG_c13719_g1_i1
314bp
FPKM:11.33 TPM:5.89
3408 A_BomoMSG_c1371_g1_i1
1421bp
 ras-like_protein_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005886 C plasma membrane
GO:0006886 P intracellular protein transport
GO:0006913 P nucleocytoplasmic transport
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0008152 P metabolic process
GO:0015031 P protein transport
GO:0016020 C membrane
FPKM:40.56 TPM:21.10
3409 A_BomoMSG_c13720_g1_i1
447bp
 chromatin_modification-related_protein_EAF7_[Bombyx_mori]
FPKM:5.25 TPM:2.73
3410 A_BomoMSG_c13721_g1_i1
2584bp
 heat_shock_protein_83_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006457 P protein folding
GO:0006950 P response to stress
GO:0051082 F unfolded protein binding
FPKM:354.06 TPM:184.19
3411 A_BomoMSG_c13722_g1_i1
323bp
 deoxyribodipyrimidine_photo-lyase_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000719 P photoreactive repair
GO:0003677 F DNA binding
GO:0003904 F deoxyribodipyrimidine photo-lyase activity
GO:0003914 F DNA (6-4) photolyase activity
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0009650 P UV protection
GO:0016829 F lyase activity
FPKM:4.85 TPM:2.52
3412 A_BomoMSG_c13723_g1_i1
1011bp
 PHD_finger_protein_14_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0008270 F zinc ion binding
GO:0008285 P negative regulation of cell population proliferation
GO:0046872 F metal ion binding
GO:0048286 P lung alveolus development
GO:0072201 P negative regulation of mesenchymal cell proliferation
GO:2000584 P negative regulation of platelet-derived growth factor receptor-alpha signaling pathway
GO:2000791 P negative regulation of mesenchymal cell proliferation involved in lung development
FPKM:4.03 TPM:2.10
3413 A_BomoMSG_c13724_g1_i1
323bp
 alpha-tocopherol_transfer_protein-like_[Bombyx_mori]
FPKM:0.00 TPM:0.00
3414 A_BomoMSG_c13724_g1_i2
465bp
 alpha-tocopherol_transfer_protein-like_[Bombyx_mori]
GO:0001890 P placenta development
GO:0001892 P embryonic placenta development
GO:0005215 F transporter activity
GO:0005515 F protein binding
GO:0005546 F phosphatidylinositol-4,5-bisphosphate binding
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0005770 C late endosome
GO:0005829 C cytosol
GO:0006629 P lipid metabolic process
GO:0006810 P transport
GO:0007584 P response to nutrient
GO:0008289 F lipid binding
GO:0008431 F vitamin E binding
GO:0009268 P response to pH
GO:0009636 P response to toxic substance
GO:0019842 F vitamin binding
GO:0032502 P developmental process
GO:0042360 P vitamin E metabolic process
GO:0043325 F phosphatidylinositol-3,4-bisphosphate binding
GO:0046909 P obsolete intermembrane transport
GO:0051180 P vitamin transport
GO:0051452 P intracellular pH reduction
GO:0060548 P negative regulation of cell death
GO:0090212 P negative regulation of establishment of blood-brain barrier
FPKM:3.99 TPM:2.08
3415 A_BomoMSG_c13725_g1_i1
4064bp
 nonclathrin_coat_protein_gamma2-COP,_partial_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0005198 F structural molecule activity
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0030117 C membrane coat
GO:0030126 C COPI vesicle coat
GO:0030663 C COPI-coated vesicle membrane
GO:0031410 C cytoplasmic vesicle
FPKM:0.00 TPM:0.00
3416 A_BomoMSG_c13725_g1_i2
4080bp
 nonclathrin_coat_protein_gamma2-COP,_partial_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0005198 F structural molecule activity
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0030117 C membrane coat
GO:0030126 C COPI vesicle coat
GO:0030663 C COPI-coated vesicle membrane
GO:0031410 C cytoplasmic vesicle
FPKM:32.61 TPM:16.96
3417 A_BomoMSG_c13726_g1_i1
579bp
FPKM:2.65 TPM:1.38
3418 A_BomoMSG_c13727_g1_i1
700bp
FPKM:2.29 TPM:1.19
3419 A_BomoMSG_c13728_g1_i1
266bp
FPKM:5.66 TPM:2.94
3420 A_BomoMSG_c13729_g1_i1
823bp
 leucine-zipper-like_transcriptional_regulator_1_[Bombyx_mori]
GO:0005794 C Golgi apparatus
FPKM:1.27 TPM:0.66
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