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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
3331 A_BomoMSG_c13642_g1_i1
759bp
 WD_repeat-containing_protein_81_[Bombyx_mori]
GO:0000132 P establishment of mitotic spindle orientation
GO:0000776 C kinetochore
GO:0005739 C mitochondrion
GO:0005813 C centrosome
GO:0005874 C microtubule
GO:0005875 C microtubule associated complex
GO:0005938 C cell cortex
GO:0007097 P nuclear migration
GO:0007281 P germ cell development
GO:0008017 F microtubule binding
GO:0008090 P retrograde axonal transport
GO:0010923 P negative regulation of phosphatase activity
GO:0022008 P neurogenesis
GO:0031023 P microtubule organizing center organization
GO:0045502 F dynein complex binding
GO:0047496 P vesicle transport along microtubule
GO:1904115 C axon cytoplasm
GO:2000574 P obsolete regulation of microtubule motor activity
FPKM:1.57 TPM:0.82
3332 A_BomoMSG_c13643_g1_i1
249bp
FPKM:6.60 TPM:3.43
3333 A_BomoMSG_c13645_g1_i1
622bp
 LOW_QUALITY_PROTEIN:_chondroitin_sulfate_proteoglycan_4_[Bombyx_mori]
GO:0001525 P angiogenesis
GO:0004871 F obsolete signal transducer activity
GO:0005518 F collagen binding
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006954 P inflammatory response
GO:0007165 P signal transduction
GO:0007275 P multicellular organism development
GO:0009986 C cell surface
GO:0010226 P response to lithium ion
GO:0010977 P negative regulation of neuron projection development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016322 P neuron remodeling
GO:0016324 C apical plasma membrane
GO:0016477 P cell migration
GO:0030154 P cell differentiation
GO:0031258 C lamellipodium membrane
GO:0042995 C cell projection
GO:0048771 P tissue remodeling
FPKM:1.40 TPM:0.73
3334 A_BomoMSG_c13646_g1_i1
425bp
FPKM:19.18 TPM:9.98
3335 A_BomoMSG_c13647_g1_i1
230bp
FPKM:10.26 TPM:5.34
3336 A_BomoMSG_c13648_g1_i1
379bp
 venom_serine_carboxypeptidase_[Bombyx_mori]
GO:0004180 F carboxypeptidase activity
GO:0004185 F serine-type carboxypeptidase activity
GO:0005576 C extracellular region
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0016787 F hydrolase activity
FPKM:4.97 TPM:2.59
3337 A_BomoMSG_c13649_g1_i1
270bp
FPKM:1.49 TPM:0.78
3338 A_BomoMSG_c13651_g1_i1
565bp
FPKM:10.10 TPM:5.26
3339 A_BomoMSG_c13652_g1_i1
941bp
 uncharacterized_protein_LOC101742438_[Bombyx_mori]
FPKM:1.89 TPM:0.98
3340 A_BomoMSG_c13653_g1_i1
430bp
 Yokozuna_protein,_partial_[Operophtera_brumata]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:1.93 TPM:1.00
3341 A_BomoMSG_c13656_g1_i1
992bp
 eukaryotic_translation_initiation_factor_6_[Bombyx_mori]
GO:0003743 F translation initiation factor activity
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006412 P translation
GO:0006413 P translational initiation
GO:0042254 P ribosome biogenesis
GO:0042256 P mature ribosome assembly
GO:0042273 P ribosomal large subunit biogenesis
GO:0043022 F ribosome binding
GO:0043023 F ribosomal large subunit binding
FPKM:62.79 TPM:32.67
3342 A_BomoMSG_c13657_g1_i1
894bp
 gamma-tubulin_complex_component_6_[Helicoverpa_armigera]
FPKM:2.01 TPM:1.05
3343 A_BomoMSG_c13658_g1_i1
356bp
 cystathionine_beta-synthase_[Bombyx_mori]
FPKM:2.91 TPM:1.51
3344 A_BomoMSG_c13659_g1_i1
597bp
 rho_GTPase-activating_protein_21_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0005096 F GTPase activator activity
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0007030 P Golgi organization
GO:0007165 P signal transduction
GO:0016020 C membrane
GO:0030054 C cell junction
GO:0030100 P regulation of endocytosis
GO:0030659 C cytoplasmic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0043547 P positive regulation of GTPase activity
GO:0051645 P Golgi localization
GO:0051683 P establishment of Golgi localization
GO:0051684 P maintenance of Golgi location
GO:0072384 P organelle transport along microtubule
FPKM:1.88 TPM:0.98
3345 A_BomoMSG_c1365_g1_i1
243bp
FPKM:3.18 TPM:1.66
3346 A_BomoMSG_c13660_g1_i1
721bp
 jmjC_domain-containing_histone_demethylation_protein_1_isoform_X2_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007379 P segment specification
GO:0007526 P larval somatic muscle development
GO:0008270 F zinc ion binding
GO:0016491 F oxidoreductase activity
GO:0016568 P chromatin organization
GO:0019005 C SCF ubiquitin ligase complex
GO:0019233 P sensory perception of pain
GO:0031146 P SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
GO:0031519 C PcG protein complex
GO:0033522 P histone H2A ubiquitination
GO:0034647 F histone H3-tri/di/monomethyl-lysine-4 demethylase activity
GO:0034721 P histone H3-K4 demethylation, trimethyl-H3-K4-specific
GO:0046872 F metal ion binding
GO:0051213 F dioxygenase activity
GO:0051864 F histone H3-methyl-lysine-36 demethylase activity
GO:0055114 P obsolete oxidation-reduction process
GO:0070544 P histone H3-K36 demethylation
FPKM:4.41 TPM:2.29
3347 A_BomoMSG_c13661_g1_i1
535bp
 trans-1,2-dihydrobenzene-1,2-diol_dehydrogenase_isoform_X2_[Bombyx_mori]
GO:0016491 F oxidoreductase activity
GO:0047115 F trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity
GO:0047837 F D-xylose 1-dehydrogenase (NADP+) activity
GO:0055114 P obsolete oxidation-reduction process
FPKM:0.00 TPM:0.00
3348 A_BomoMSG_c13661_g1_i2
610bp
 trans-1,2-dihydrobenzene-1,2-diol_dehydrogenase_isoform_X2_[Bombyx_mori]
GO:0016491 F oxidoreductase activity
GO:0047115 F trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity
GO:0047837 F D-xylose 1-dehydrogenase (NADP+) activity
GO:0055114 P obsolete oxidation-reduction process
FPKM:0.00 TPM:0.00
3349 A_BomoMSG_c13661_g1_i3
613bp
 trans-1,2-dihydrobenzene-1,2-diol_dehydrogenase_isoform_X2_[Bombyx_mori]
GO:0016491 F oxidoreductase activity
GO:0047115 F trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity
GO:0047837 F D-xylose 1-dehydrogenase (NADP+) activity
GO:0055114 P obsolete oxidation-reduction process
FPKM:2.72 TPM:1.41
3350 A_BomoMSG_c13662_g1_i1
347bp
FPKM:3.65 TPM:1.90
3351 A_BomoMSG_c13663_g1_i1
288bp
 uncharacterized_protein_LOC101736984_isoform_X3_[Bombyx_mori]
FPKM:1.04 TPM:0.54
3352 A_BomoMSG_c13663_g1_i2
282bp
 uncharacterized_protein_LOC101736984_isoform_X3_[Bombyx_mori]
FPKM:1.18 TPM:0.61
3353 A_BomoMSG_c13664_g1_i1
288bp
 PREDICTED:_uncharacterized_protein_LOC105391190_[Plutella_xylostella]
FPKM:5.64 TPM:2.93
3354 A_BomoMSG_c13665_g1_i1
341bp
 reverse_transcriptase_-_silkworm_transposon_Pao
FPKM:2.51 TPM:1.31
3355 A_BomoMSG_c13666_g1_i1
309bp
 uncharacterized_protein_C4orf22_homolog_[Bombyx_mori]
FPKM:1.88 TPM:0.98
3356 A_BomoMSG_c13667_g1_i1
217bp
 PREDICTED:_lethal(2)neighbour_of_tid_protein-like_[Plutella_xylostella]
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0007275 P multicellular organism development
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016758 F hexosyltransferase activity
GO:0030176 C integral component of endoplasmic reticulum membrane
FPKM:11.20 TPM:5.82
3357 A_BomoMSG_c13668_g1_i1
591bp
 mitochondrial_ribosomal_protein_S21_[Bombyx_mori]
GO:0003735 F structural constituent of ribosome
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005763 C mitochondrial small ribosomal subunit
GO:0005840 C ribosome
GO:0006412 P translation
GO:0030529 C ribonucleoprotein complex
GO:0032543 P mitochondrial translation
GO:0044822 F RNA binding
GO:0070125 P mitochondrial translational elongation
GO:0070126 P mitochondrial translational termination
FPKM:18.34 TPM:9.54
3358 A_BomoMSG_c13668_g1_i2
382bp
 mitochondrial_ribosomal_protein_S21_[Bombyx_mori]
GO:0003735 F structural constituent of ribosome
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005763 C mitochondrial small ribosomal subunit
GO:0005840 C ribosome
GO:0006412 P translation
GO:0030529 C ribonucleoprotein complex
GO:0032543 P mitochondrial translation
GO:0044822 F RNA binding
GO:0070125 P mitochondrial translational elongation
GO:0070126 P mitochondrial translational termination
FPKM:0.00 TPM:0.00
3359 A_BomoMSG_c13669_g1_i1
1547bp
 prolactin_regulatory_binding-element_protein_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0003677 F DNA binding
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005634 C nucleus
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006810 P transport
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016192 P vesicle-mediated transport
GO:0036498 P IRE1-mediated unfolded protein response
GO:0043547 P positive regulation of GTPase activity
GO:0048208 P COPII vesicle coating
FPKM:31.50 TPM:16.39
3360 A_BomoMSG_c1366_g1_i1
367bp
 uncharacterized_protein_LOC101744657_[Bombyx_mori]
FPKM:6.35 TPM:3.31
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