SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/47701
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
3211 A_BomoMSG_c13526_g1_i1
388bp
FPKM:5.04 TPM:2.62
3212 A_BomoMSG_c13527_g1_i1
520bp
FPKM:7.12 TPM:3.71
3213 A_BomoMSG_c13528_g1_i1
317bp
FPKM:2.15 TPM:1.12
3214 A_BomoMSG_c13529_g1_i1
343bp
 nudC_domain-containing_protein_3_isoform_X2_[Bombyx_mori]
FPKM:5.59 TPM:2.91
3215 A_BomoMSG_c1352_g1_i1
506bp
 adenosine_deaminase_AGSA_[Bombyx_mori]
GO:0004000 F adenosine deaminase activity
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0019239 F deaminase activity
GO:0046872 F metal ion binding
FPKM:1.51 TPM:0.79
3216 A_BomoMSG_c13530_g1_i1
513bp
 hypothetical_protein_RP20_CCG005792_[Aedes_albopictus]
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004523 F RNA-DNA hybrid ribonuclease activity
GO:0005622 C intracellular anatomical structure
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0019012 C virion component
GO:0030430 C host cell cytoplasm
GO:0042025 C host cell nucleus
GO:0046718 P viral entry into host cell
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0075713 P establishment of integrated proviral latency
GO:0075732 P viral penetration into host nucleus
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
FPKM:0.83 TPM:0.43
3217 A_BomoMSG_c13530_g2_i1
374bp
 PREDICTED:_uncharacterized_protein_LOC106131548_[Amyelois_transitella]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005634 C nucleus
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:2.68 TPM:1.39
3218 A_BomoMSG_c13531_g1_i1
232bp
 ATP-dependent_helicase_[Bombyx_mori]
FPKM:0.00 TPM:0.00
3219 A_BomoMSG_c13532_g1_i1
220bp
 protein_lethal(2)essential_for_life_[Bombyx_mori]
GO:0006497 P protein lipidation
GO:0007275 P multicellular organism development
GO:0010506 P regulation of autophagy
GO:0010998 P regulation of translational initiation by eIF2 alpha phosphorylation
FPKM:2.48 TPM:1.29
3220 A_BomoMSG_c13534_g1_i1
405bp
FPKM:10.11 TPM:5.26
3221 A_BomoMSG_c13535_g1_i1
1888bp
 U4/U6.U5_small_nuclear_ribonucleoprotein_27_kDa_protein_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0006397 P mRNA processing
GO:0008150 P biological_process
GO:0008380 P RNA splicing
GO:0071011 C precatalytic spliceosome
FPKM:32.26 TPM:16.78
3222 A_BomoMSG_c13536_g1_i1
661bp
FPKM:2.93 TPM:1.52
3223 A_BomoMSG_c13537_g1_i1
449bp
FPKM:4.41 TPM:2.29
3224 A_BomoMSG_c13538_g1_i1
280bp
 autophagy-related_protein_2_homolog_A_[Bombyx_mori]
GO:0000045 P autophagosome assembly
GO:0000407 C phagophore assembly site
GO:0000422 P autophagy of mitochondrion
GO:0006914 P autophagy
GO:0019898 C extrinsic component of membrane
GO:0044804 P autophagy of nucleus
FPKM:6.44 TPM:3.35
3225 A_BomoMSG_c13539_g1_i1
1373bp
 ralA-binding_protein_1_isoform_X1_[Bombyx_mori]
GO:0005096 F GTPase activator activity
GO:0005515 F protein binding
GO:0005575 C cellular_component
GO:0006898 P receptor-mediated endocytosis
GO:0007165 P signal transduction
GO:0007275 P multicellular organism development
GO:0016020 C membrane
GO:0017160 F small GTPase binding
GO:0043547 P positive regulation of GTPase activity
GO:0046578 P regulation of Ras protein signal transduction
FPKM:45.58 TPM:23.71
3226 A_BomoMSG_c1353_g1_i1
266bp
 TBC1_domain_family_member_24_isoform_X5_[Bombyx_mori]
FPKM:2.06 TPM:1.07
3227 A_BomoMSG_c13540_g1_i1
272bp
 putative_Collagen_alpha-1_[Danaus_plexippus_plexippus]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005581 C collagen trimer
GO:0005886 C plasma membrane
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:0.00 TPM:0.00
3228 A_BomoMSG_c13540_g1_i2
489bp
 collagen_alpha_chain_CG42342_[Bombyx_mori]
FPKM:2.30 TPM:1.20
3229 A_BomoMSG_c13543_g1_i1
542bp
 uncharacterized_protein_LOC101739885_isoform_X2_[Bombyx_mori]
FPKM:3.69 TPM:1.92
3230 A_BomoMSG_c13543_g1_i2
955bp
 peptidoglycan-recognition_protein_SC2_isoform_X1_[Bombyx_mori]
GO:0002376 P immune system process
GO:0005576 C extracellular region
GO:0005887 C integral component of plasma membrane
GO:0006952 P defense response
GO:0006955 P immune response
GO:0008270 F zinc ion binding
GO:0008745 F N-acetylmuramoyl-L-alanine amidase activity
GO:0009253 P peptidoglycan catabolic process
GO:0016787 F hydrolase activity
GO:0042834 F peptidoglycan binding
GO:0045087 P innate immune response
GO:0045824 P negative regulation of innate immune response
GO:0046872 F metal ion binding
FPKM:2.07 TPM:1.08
3231 A_BomoMSG_c13544_g1_i1
229bp
 reverse_transcriptase_-_silkworm_transposon_Pao
FPKM:2.22 TPM:1.16
3232 A_BomoMSG_c13545_g1_i1
265bp
FPKM:3.63 TPM:1.89
3233 A_BomoMSG_c13547_g1_i1
330bp
FPKM:6.33 TPM:3.29
3234 A_BomoMSG_c13548_g1_i1
487bp
FPKM:7.65 TPM:3.98
3235 A_BomoMSG_c13549_g1_i1
281bp
FPKM:5.02 TPM:2.61
3236 A_BomoMSG_c1354_g1_i1
214bp
FPKM:5.38 TPM:2.80
3237 A_BomoMSG_c13550_g1_i1
269bp
 CD2-associated_protein_isoform_X1_[Bombyx_mori]
FPKM:3.51 TPM:1.83
3238 A_BomoMSG_c13551_g1_i1
835bp
 uncharacterized_protein_LOC101736617_[Bombyx_mori]
FPKM:18.71 TPM:9.73
3239 A_BomoMSG_c13552_g1_i1
579bp
FPKM:80.99 TPM:42.13
3240 A_BomoMSG_c13553_g1_i1
449bp
FPKM:21.85 TPM:11.36
previous next from show/47701

- SilkBase 1999-2023 -