SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/47701
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
2881 A_BomoMSG_c13176_g1_i1
536bp
 WD_repeat-containing_protein_44_[Bombyx_mori]
FPKM:2.31 TPM:1.20
2882 A_BomoMSG_c13176_g1_i2
488bp
 WD_repeat-containing_protein_44_[Bombyx_mori]
FPKM:1.44 TPM:0.75
2883 A_BomoMSG_c13177_g1_i1
240bp
FPKM:2.63 TPM:1.37
2884 A_BomoMSG_c13178_g1_i1
231bp
FPKM:1.45 TPM:0.75
2885 A_BomoMSG_c1317_g1_i1
269bp
 PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_isoform_X4_[Papilio_machaon]
FPKM:2.51 TPM:1.30
2886 A_BomoMSG_c13181_g1_i1
614bp
 sodium-independent_sulfate_anion_transporter_isoform_X5_[Bombyx_mori]
FPKM:4.70 TPM:2.45
2887 A_BomoMSG_c13182_g1_i1
358bp
FPKM:4.90 TPM:2.55
2888 A_BomoMSG_c13183_g1_i1
552bp
 ataxin-2-like_protein_[Bombyx_mori]
FPKM:1.88 TPM:0.98
2889 A_BomoMSG_c13183_g1_i2
904bp
 ataxin-2-like_protein_[Bombyx_mori]
FPKM:3.68 TPM:1.92
2890 A_BomoMSG_c13184_g1_i1
303bp
FPKM:5.48 TPM:2.85
2891 A_BomoMSG_c13185_g1_i1
428bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:4.96 TPM:2.58
2892 A_BomoMSG_c13187_g1_i1
814bp
FPKM:4.06 TPM:2.11
2893 A_BomoMSG_c13187_g2_i1
217bp
FPKM:4.31 TPM:2.24
2894 A_BomoMSG_c13188_g1_i1
409bp
FPKM:3.93 TPM:2.05
2895 A_BomoMSG_c13189_g1_i1
257bp
putative_uncharacterized_protein_[Azospirillum_sp._CAG:260]
FPKM:3.34 TPM:1.74
2896 A_BomoMSG_c13191_g1_i1
450bp
 putative_leucine-rich_repeat-containing_protein_DDB_G0290503_[Bombyx_mori]
FPKM:3.80 TPM:1.97
2897 A_BomoMSG_c13192_g1_i1
575bp
FPKM:4.37 TPM:2.27
2898 A_BomoMSG_c13195_g1_i1
327bp
 anaphase-promoting_complex_subunit_1_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005680 C anaphase-promoting complex
GO:0005829 C cytosol
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0016567 P protein ubiquitination
GO:0031145 P anaphase-promoting complex-dependent catabolic process
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0051301 P cell division
GO:0051436 P obsolete negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0051437 P obsolete positive regulation of ubiquitin-protein ligase activity involved in regulation of mitotic cell cycle transition
GO:0051439 P obsolete regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0070979 P protein K11-linked ubiquitination
FPKM:2.37 TPM:1.23
2899 A_BomoMSG_c13196_g1_i1
213bp
FPKM:2.73 TPM:1.42
2900 A_BomoMSG_c13197_g1_i1
844bp
 PREDICTED:_uncharacterized_protein_LOC105385902_[Plutella_xylostella]
FPKM:2.93 TPM:1.53
2901 A_BomoMSG_c13198_g1_i1
229bp
 Uncharacterized_protein_OBRU01_00719_[Operophtera_brumata]
FPKM:0.00 TPM:0.00
2902 A_BomoMSG_c13199_g1_i1
366bp
FPKM:4.16 TPM:2.17
2903 A_BomoMSG_c1319_g1_i1
302bp
FPKM:0.39 TPM:0.21
2904 A_BomoMSG_c13201_g1_i1
452bp
FPKM:4.17 TPM:2.17
2905 A_BomoMSG_c13203_g1_i1
540bp
FPKM:1.84 TPM:0.96
2906 A_BomoMSG_c13205_g1_i1
305bp
 uncharacterized_protein_LOC101737350_[Bombyx_mori]
FPKM:1.55 TPM:0.80
2907 A_BomoMSG_c13208_g1_i1
206bp
 PREDICTED:_WD_repeat-containing_protein_24_[Papilio_xuthus]
GO:0032008 P positive regulation of TOR signaling
GO:0034198 P cellular response to amino acid starvation
GO:0061700 C GATOR2 complex
FPKM:5.03 TPM:2.62
2908 A_BomoMSG_c13209_g1_i1
494bp
 fatty_acyl-CoA_reductase_wat-like_isoform_X1_[Bombyx_mori]
GO:0005777 C peroxisome
GO:0005778 C peroxisomal membrane
GO:0006629 P lipid metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016491 F oxidoreductase activity
GO:0016620 F oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
GO:0055114 P obsolete oxidation-reduction process
GO:0080019 F fatty-acyl-CoA reductase (alcohol-forming) activity
FPKM:1.57 TPM:0.82
2909 A_BomoMSG_c13210_g1_i1
256bp
 leucine-rich_repeat_protein_soc-2_homolog_[Bombyx_mori]
GO:0000164 C protein phosphatase type 1 complex
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0019903 F protein phosphatase binding
GO:0046579 P positive regulation of Ras protein signal transduction
FPKM:12.35 TPM:6.43
2910 A_BomoMSG_c13211_g1_i1
523bp
 Tyrosine-protein_phosphatase_Lar_[Danaus_plexippus_plexippus]
GO:0001700 P embryonic development via the syncytial blastoderm
GO:0004721 F phosphoprotein phosphatase activity
GO:0004725 F protein tyrosine phosphatase activity
GO:0005001 F transmembrane receptor protein tyrosine phosphatase activity
GO:0005515 F protein binding
GO:0005875 C microtubule associated complex
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0006470 P protein dephosphorylation
GO:0007155 P cell adhesion
GO:0007283 P spermatogenesis
GO:0007399 P nervous system development
GO:0007411 P axon guidance
GO:0007412 P axon target recognition
GO:0008045 P motor neuron axon guidance
GO:0008201 F heparin binding
GO:0008360 P regulation of cell shape
GO:0008594 P photoreceptor cell morphogenesis
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0030424 C axon
GO:0031290 P retinal ganglion cell axon guidance
GO:0032093 F SAM domain binding
GO:0035335 P peptidyl-tyrosine dephosphorylation
GO:0045467 P R7 cell development
GO:0048477 P oogenesis
GO:0048675 P axon extension
GO:0048841 P regulation of axon extension involved in axon guidance
GO:0051124 P synaptic assembly at neuromuscular junction
GO:1903386 P negative regulation of homophilic cell adhesion
FPKM:3.21 TPM:1.67
previous next from show/47701

- SilkBase 1999-2023 -