SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/47701
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
2911 A_BomoMSG_c13212_g1_i1
625bp
 uncharacterized_protein_LOC101738426_[Bombyx_mori]
GO:0000981 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
FPKM:2.40 TPM:1.25
2912 A_BomoMSG_c13214_g1_i1
281bp
FPKM:4.11 TPM:2.14
2913 A_BomoMSG_c13216_g1_i1
461bp
FPKM:2.89 TPM:1.50
2914 A_BomoMSG_c13217_g1_i1
561bp
FPKM:5.68 TPM:2.96
2915 A_BomoMSG_c13217_g1_i2
230bp
FPKM:0.00 TPM:0.00
2916 A_BomoMSG_c13218_g1_i1
639bp
 carboxyl/cholinesterase_6_isoform_X1_[Bombyx_mori]
GO:0004453 F juvenile-hormone esterase activity
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0052689 F carboxylic ester hydrolase activity
FPKM:2.69 TPM:1.40
2917 A_BomoMSG_c13219_g1_i1
531bp
FPKM:3.14 TPM:1.64
2918 A_BomoMSG_c1321_g1_i1
244bp
FPKM:2.52 TPM:1.31
2919 A_BomoMSG_c13220_g1_i1
590bp
FPKM:3.95 TPM:2.05
2920 A_BomoMSG_c13221_g1_i1
436bp
 uncharacterized_protein_LOC101745497_[Bombyx_mori]
FPKM:11.11 TPM:5.78
2921 A_BomoMSG_c13221_g1_i2
422bp
 uncharacterized_protein_LOC101745497_[Bombyx_mori]
FPKM:0.00 TPM:0.00
2922 A_BomoMSG_c13222_g1_i1
222bp
FPKM:5.65 TPM:2.94
2923 A_BomoMSG_c13223_g1_i1
273bp
FPKM:3.40 TPM:1.77
2924 A_BomoMSG_c13223_g1_i2
250bp
FPKM:0.00 TPM:0.00
2925 A_BomoMSG_c13224_g1_i1
263bp
 ORF2_[Bombyx_mori]
FPKM:2.64 TPM:1.37
2926 A_BomoMSG_c13224_g1_i2
271bp
 ORF2_[Bombyx_mori]
FPKM:0.00 TPM:0.00
2927 A_BomoMSG_c13226_g1_i1
324bp
 breast_cancer_type_1_susceptibility_protein_homolog_[Bombyx_mori]
FPKM:0.34 TPM:0.18
2928 A_BomoMSG_c13227_g1_i1
425bp
 uncharacterized_protein_LOC101736544_[Bombyx_mori]
FPKM:1.74 TPM:0.90
2929 A_BomoMSG_c13228_g1_i1
236bp
FPKM:4.11 TPM:2.14
2930 A_BomoMSG_c13229_g1_i1
376bp
FPKM:3.45 TPM:1.79
2931 A_BomoMSG_c13230_g1_i1
376bp
FPKM:1.86 TPM:0.97
2932 A_BomoMSG_c13231_g1_i1
644bp
FPKM:2.67 TPM:1.39
2933 A_BomoMSG_c13233_g1_i1
529bp
 UPF0389_protein_CG9231_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0019233 P sensory perception of pain
FPKM:87.10 TPM:45.31
2934 A_BomoMSG_c13234_g1_i1
248bp
 uncharacterized_protein_LOC101739729_[Bombyx_mori]
FPKM:6.66 TPM:3.46
2935 A_BomoMSG_c13237_g1_i1
250bp
 xylosyltransferase_oxt_isoform_X2_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0006024 P glycosaminoglycan biosynthetic process
GO:0008375 F acetylglucosaminyltransferase activity
GO:0015012 P heparan sulfate proteoglycan biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0030158 F protein xylosyltransferase activity
GO:0030206 P chondroitin sulfate biosynthetic process
GO:0042732 P D-xylose metabolic process
GO:0050650 P chondroitin sulfate proteoglycan biosynthetic process
FPKM:2.97 TPM:1.54
2936 A_BomoMSG_c13238_g1_i1
316bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_endoribonuclease_Dcr-1_[Papilio_xuthus]
GO:0000166 F nucleotide binding
GO:0003723 F RNA binding
GO:0003725 F double-stranded RNA binding
GO:0003727 F single-stranded RNA binding
GO:0004386 F helicase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004525 F ribonuclease III activity
GO:0004530 F deoxyribonuclease I activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006309 P apoptotic DNA fragmentation
GO:0006396 P RNA processing
GO:0007279 P pole cell formation
GO:0007294 P germarium-derived oocyte fate determination
GO:0007367 P segment polarity determination
GO:0016246 P RNA interference
GO:0016442 C RISC complex
GO:0016443 F bidentate ribonuclease III activity
GO:0016787 F hydrolase activity
GO:0016891 F endoribonuclease activity, producing 5'-phosphomonoesters
GO:0030422 P production of siRNA involved in RNA interference
GO:0030727 P germarium-derived female germ-line cyst formation
GO:0031047 P gene silencing by RNA
GO:0031054 P pre-miRNA processing
GO:0033227 P dsRNA transport
GO:0035087 P siRNA loading onto RISC involved in RNA interference
GO:0035196 P production of miRNAs involved in gene silencing by miRNA
GO:0042078 P germ-line stem cell division
GO:0042594 P response to starvation
GO:0045448 P mitotic cell cycle, embryonic
GO:0046872 F metal ion binding
GO:0048813 P dendrite morphogenesis
GO:0070883 F pre-miRNA binding
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
FPKM:3.25 TPM:1.69
2937 A_BomoMSG_c13239_g1_i1
269bp
FPKM:6.52 TPM:3.39
2938 A_BomoMSG_c13240_g1_i1
347bp
FPKM:4.26 TPM:2.22
2939 A_BomoMSG_c13241_g1_i1
306bp
FPKM:3.84 TPM:2.00
2940 A_BomoMSG_c13241_g2_i1
323bp
FPKM:2.08 TPM:1.08
previous next from show/47701

- SilkBase 1999-2023 -