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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
2851 A_BomoMSG_c13142_g1_i1
289bp
FPKM:5.60 TPM:2.91
2852 A_BomoMSG_c13144_g1_i1
423bp
 uncharacterized_protein_LOC101745407_isoform_X4_[Bombyx_mori]
FPKM:1.98 TPM:1.03
2853 A_BomoMSG_c13145_g1_i1
290bp
 PREDICTED:_uncharacterized_protein_LOC106116750_isoform_X2_[Papilio_xuthus]
FPKM:0.86 TPM:0.44
2854 A_BomoMSG_c13147_g1_i1
342bp
FPKM:5.93 TPM:3.09
2855 A_BomoMSG_c13148_g1_i1
594bp
 uncharacterized_protein_LOC110385997_[Bombyx_mori]
FPKM:0.45 TPM:0.24
2856 A_BomoMSG_c13148_g1_i2
520bp
 uncharacterized_protein_LOC110385997_[Bombyx_mori]
FPKM:1.56 TPM:0.81
2857 A_BomoMSG_c13149_g1_i1
1532bp
 ATP-binding_cassette_sub-family_C_member_Sur_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001666 P response to hypoxia
GO:0005524 F ATP binding
GO:0006031 P chitin biosynthetic process
GO:0006810 P transport
GO:0007507 P heart development
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0016887 F ATP hydrolysis activity
GO:0042626 F ATPase-coupled transmembrane transporter activity
GO:0055085 P transmembrane transport
FPKM:3.21 TPM:1.67
2858 A_BomoMSG_c13150_g1_i1
209bp
FPKM:4.81 TPM:2.50
2859 A_BomoMSG_c13152_g1_i1
244bp
FPKM:10.08 TPM:5.24
2860 A_BomoMSG_c13154_g1_i1
350bp
FPKM:7.79 TPM:4.05
2861 A_BomoMSG_c13155_g1_i1
464bp
 probable_serine/threonine-protein_kinase_DDB_G0278901_isoform_X2_[Bombyx_mori]
FPKM:2.29 TPM:1.19
2862 A_BomoMSG_c13156_g1_i1
333bp
 hypothetical_protein_KGM_211761_[Danaus_plexippus_plexippus]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004523 F RNA-DNA hybrid ribonuclease activity
GO:0005198 F structural molecule activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016032 P viral process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0019012 C virion component
GO:0019028 C viral capsid
GO:0046718 P viral entry into host cell
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0075713 P establishment of integrated proviral latency
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
FPKM:2.62 TPM:1.36
2863 A_BomoMSG_c13157_g1_i1
497bp
FPKM:2.24 TPM:1.17
2864 A_BomoMSG_c1315_g1_i1
321bp
 membrane-associated_guanylate_kinase,_WW_and_PDZ_domain-containing_protein_2_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005911 C cell-cell junction
GO:0007155 P cell adhesion
GO:0014069 C postsynaptic density
GO:0030054 C cell junction
GO:0035556 P intracellular signal transduction
GO:0043005 C neuron projection
GO:0045177 C apical part of cell
FPKM:1.05 TPM:0.55
2865 A_BomoMSG_c13162_g1_i1
270bp
 probable_serine_hydrolase_[Bombyx_mori]
GO:0005575 C cellular_component
GO:0007275 P multicellular organism development
GO:0007586 P digestion
GO:0008152 P metabolic process
GO:0009636 P response to toxic substance
GO:0016787 F hydrolase activity
GO:0017171 F serine hydrolase activity
GO:0019233 P sensory perception of pain
GO:0052689 F carboxylic ester hydrolase activity
FPKM:3.98 TPM:2.07
2866 A_BomoMSG_c13163_g1_i1
635bp
 WD_repeat-containing_protein_48_homolog_isoform_X1_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0005768 C endosome
GO:0005770 C late endosome
GO:0016579 P protein deubiquitination
FPKM:4.32 TPM:2.25
2867 A_BomoMSG_c13165_g1_i1
312bp
FPKM:1.11 TPM:0.58
2868 A_BomoMSG_c13165_g1_i2
217bp
FPKM:0.00 TPM:0.00
2869 A_BomoMSG_c13166_g1_i1
321bp
FPKM:2.10 TPM:1.09
2870 A_BomoMSG_c13167_g1_i1
270bp
 modifier_of_mdg4,_partial_[Danaus_plexippus_plexippus]
FPKM:7.46 TPM:3.88
2871 A_BomoMSG_c13168_g1_i1
1286bp
 fibrillin-1_[Bombyx_mori]
GO:0001558 P regulation of cell growth
GO:0005178 F integrin binding
GO:0005509 F calcium ion binding
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005615 C extracellular space
GO:0007155 P cell adhesion
GO:0008022 F protein C-terminus binding
GO:0030198 P extracellular matrix organization
GO:0031012 C extracellular matrix
GO:0034394 P protein localization to cell surface
GO:0042803 F protein homodimerization activity
GO:0046903 P secretion
GO:0048251 P elastic fiber assembly
GO:0070062 C extracellular exosome
GO:0071953 C elastic fiber
GO:2000121 P regulation of removal of superoxide radicals
FPKM:1.63 TPM:0.85
2872 A_BomoMSG_c13169_g1_i1
545bp
 protein_transport_protein_Sec24A_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0001843 P neural tube closure
GO:0002093 P auditory receptor cell morphogenesis
GO:0002474 P antigen processing and presentation of peptide antigen via MHC class I
GO:0003151 P outflow tract morphogenesis
GO:0005215 F transporter activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0008270 F zinc ion binding
GO:0012507 C ER to Golgi transport vesicle membrane
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0019886 P antigen processing and presentation of exogenous peptide antigen via MHC class II
GO:0021747 P cochlear nucleus development
GO:0030127 C COPII vesicle coat
GO:0030134 C COPII-coated ER to Golgi transport vesicle
GO:0035909 P aorta morphogenesis
GO:0048208 P COPII vesicle coating
GO:0048471 C perinuclear region of cytoplasm
GO:0060088 P auditory receptor cell stereocilium organization
GO:0060425 P lung morphogenesis
GO:0060463 P lung lobe morphogenesis
GO:0060982 P coronary artery morphogenesis
GO:0061156 P pulmonary artery morphogenesis
GO:0072358 P circulatory system development
GO:0090178 P regulation of establishment of planar polarity involved in neural tube closure
GO:1901301 P regulation of cargo loading into COPII-coated vesicle
FPKM:6.52 TPM:3.39
2873 A_BomoMSG_c13170_g1_i1
217bp
FPKM:3.45 TPM:1.79
2874 A_BomoMSG_c13171_g1_i1
447bp
 PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Amyelois_transitella]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0005575 C cellular_component
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006313 P transposition, DNA-mediated
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
FPKM:0.00 TPM:0.00
2875 A_BomoMSG_c13171_g1_i2
893bp
 PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Amyelois_transitella]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0005575 C cellular_component
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006313 P transposition, DNA-mediated
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
FPKM:1.77 TPM:0.92
2876 A_BomoMSG_c13172_g1_i1
344bp
FPKM:3.09 TPM:1.61
2877 A_BomoMSG_c13173_g1_i1
209bp
FPKM:1.93 TPM:1.00
2878 A_BomoMSG_c13174_g1_i1
337bp
 armadillo_repeat-containing_protein_8_isoform_X2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
FPKM:3.84 TPM:2.00
2879 A_BomoMSG_c13174_g1_i2
222bp
 armadillo_repeat-containing_protein_8_isoform_X1_[Bombyx_mori]
GO:0005575 C cellular_component
GO:0008150 P biological_process
FPKM:2.43 TPM:1.26
2880 A_BomoMSG_c13175_g1_i1
898bp
 sepiapterin_reductase_[Bombyx_mori]
GO:0004757 F sepiapterin reductase activity
GO:0005737 C cytoplasm
GO:0006729 P tetrahydrobiopterin biosynthetic process
GO:0008152 P metabolic process
GO:0016491 F oxidoreductase activity
GO:0055114 P obsolete oxidation-reduction process
FPKM:2.32 TPM:1.21
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