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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
2251 A_BomoMSG_c12494_g1_i1
368bp
 uncharacterized_protein_LOC101738987_isoform_X1_[Bombyx_mori]
FPKM:1.65 TPM:0.86
2252 A_BomoMSG_c12494_g1_i2
320bp
 uncharacterized_protein_LOC101738987_isoform_X1_[Bombyx_mori]
FPKM:0.00 TPM:0.00
2253 A_BomoMSG_c12495_g1_i1
360bp
 zinc_finger_protein_718_isoform_X2_[Bombyx_mori]
FPKM:0.00 TPM:0.00
2254 A_BomoMSG_c12495_g1_i2
666bp
 zinc_finger_protein_718_isoform_X2_[Bombyx_mori]
FPKM:0.00 TPM:0.00
2255 A_BomoMSG_c12495_g1_i3
744bp
 zinc_finger_protein_718_isoform_X2_[Bombyx_mori]
FPKM:2.32 TPM:1.21
2256 A_BomoMSG_c12496_g1_i1
277bp
FPKM:6.59 TPM:3.43
2257 A_BomoMSG_c12497_g1_i1
285bp
FPKM:13.30 TPM:6.92
2258 A_BomoMSG_c12498_g1_i1
343bp
 putative_zinc_binding_dehydrogenase_[Operophtera_brumata]
FPKM:3.42 TPM:1.78
2259 A_BomoMSG_c12498_g1_i2
315bp
 putative_zinc_binding_dehydrogenase_[Operophtera_brumata]
FPKM:0.00 TPM:0.00
2260 A_BomoMSG_c12498_g1_i3
237bp
 putative_zinc_binding_dehydrogenase_[Operophtera_brumata]
FPKM:0.00 TPM:0.00
2261 A_BomoMSG_c1249_g1_i1
207bp
 survivin-1_[Bombyx_mori]
GO:0000922 C spindle pole
GO:0001890 P placenta development
GO:0004842 F ubiquitin-protein transferase activity
GO:0004869 F cysteine-type endopeptidase inhibitor activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005794 C Golgi apparatus
GO:0005802 C trans-Golgi network
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0006915 P apoptotic process
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0008284 P positive regulation of cell population proliferation
GO:0009966 P regulation of signal transduction
GO:0010466 P negative regulation of peptidase activity
GO:0010951 P negative regulation of endopeptidase activity
GO:0016020 C membrane
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030414 F peptidase inhibitor activity
GO:0030496 C midbody
GO:0032465 P regulation of cytokinesis
GO:0042127 P regulation of cell population proliferation
GO:0043066 P negative regulation of apoptotic process
GO:0051301 P cell division
GO:0060711 P labyrinthine layer development
GO:0060712 P spongiotrophoblast layer development
GO:0061631 F ubiquitin conjugating enzyme activity
GO:2001237 P negative regulation of extrinsic apoptotic signaling pathway
FPKM:9.91 TPM:5.16
2262 A_BomoMSG_c12500_g1_i1
296bp
 PREDICTED:_dystrophin,_isoforms_A/C/F/G/H-like_[Amyelois_transitella]
GO:0001954 P positive regulation of cell-matrix adhesion
GO:0002027 P regulation of heart rate
GO:0002162 F dystroglycan binding
GO:0003779 F actin binding
GO:0005200 F structural constituent of cytoskeleton
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0006355 P regulation of transcription, DNA-templated
GO:0007517 P muscle organ development
GO:0007519 P skeletal muscle tissue development
GO:0008065 P establishment of blood-nerve barrier
GO:0008270 F zinc ion binding
GO:0008307 F structural constituent of muscle
GO:0009986 C cell surface
GO:0010468 P regulation of gene expression
GO:0010880 P regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum
GO:0010881 P regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion
GO:0010976 P positive regulation of neuron projection development
GO:0014809 P regulation of skeletal muscle contraction by regulation of release of sequestered calcium ion
GO:0014819 P regulation of skeletal muscle contraction
GO:0014904 P myotube cell development
GO:0016010 C dystrophin-associated glycoprotein complex
GO:0016020 C membrane
GO:0016203 P muscle attachment
GO:0017022 F myosin binding
GO:0017166 F vinculin binding
GO:0021629 P olfactory nerve structural organization
GO:0030018 C Z disc
GO:0030054 C cell junction
GO:0030055 C cell-substrate junction
GO:0030175 C filopodium
GO:0031527 C filopodium membrane
GO:0033137 P negative regulation of peptidyl-serine phosphorylation
GO:0034613 P cellular protein localization
GO:0035994 P response to muscle stretch
GO:0042383 C sarcolemma
GO:0042391 P regulation of membrane potential
GO:0043034 C costamere
GO:0043043 P peptide biosynthetic process
GO:0043234 C protein-containing complex
GO:0043623 P protein-containing complex assembly
GO:0044306 C neuron projection terminus
GO:0045121 C membrane raft
GO:0045202 C synapse
GO:0045211 C postsynaptic membrane
GO:0045213 P neurotransmitter receptor metabolic process
GO:0045666 P positive regulation of neuron differentiation
GO:0046716 P muscle cell cellular homeostasis
GO:0046872 F metal ion binding
GO:0048747 P muscle cell development
GO:0050998 F nitric-oxide synthase binding
GO:0051647 P nucleus localization
GO:0060048 P cardiac muscle contraction
GO:0060314 P regulation of ryanodine-sensitive calcium-release channel activity
GO:0060857 P establishment of glial blood-brain barrier
GO:0070373 P negative regulation of ERK1 and ERK2 cascade
GO:0086001 P cardiac muscle cell action potential
GO:0090287 P regulation of cellular response to growth factor stimulus
GO:1901385 P regulation of voltage-gated calcium channel activity
GO:1902083 P negative regulation of peptidyl-cysteine S-nitrosylation
GO:2000651 P positive regulation of sodium ion transmembrane transporter activity
FPKM:2.05 TPM:1.07
2263 A_BomoMSG_c12501_g1_i1
440bp
 uncharacterized_protein_K02A2.6_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0046872 F metal ion binding
FPKM:1.86 TPM:0.97
2264 A_BomoMSG_c12502_g1_i1
409bp
 ceramide_phosphoethanolamine_synthase_[Bombyx_mori]
FPKM:1.62 TPM:0.84
2265 A_BomoMSG_c12503_g1_i1
461bp
 general_vesicular_transport_factor_p115_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0005515 F protein binding
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0005795 C Golgi stack
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0008565 F obsolete protein transporter activity
GO:0012507 C ER to Golgi transport vesicle membrane
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0030133 C transport vesicle
GO:0044822 F RNA binding
GO:0045056 P transcytosis
GO:0048193 P Golgi vesicle transport
GO:0048208 P COPII vesicle coating
GO:0048211 P Golgi vesicle docking
GO:0048280 P vesicle fusion with Golgi apparatus
GO:0048471 C perinuclear region of cytoplasm
GO:0061025 P membrane fusion
FPKM:8.86 TPM:4.61
2266 A_BomoMSG_c12504_g1_i1
266bp
FPKM:2.06 TPM:1.07
2267 A_BomoMSG_c12506_g1_i1
259bp
FPKM:18.58 TPM:9.67
2268 A_BomoMSG_c12508_g1_i1
296bp
FPKM:2.46 TPM:1.28
2269 A_BomoMSG_c12509_g1_i1
553bp
FPKM:1.93 TPM:1.00
2270 A_BomoMSG_c12511_g1_i1
326bp
 TRAS3_[Bombyx_mori]
FPKM:6.81 TPM:3.54
2271 A_BomoMSG_c12512_g1_i1
313bp
 exportin-4_[Bombyx_mori]
GO:0005049 F nuclear export signal receptor activity
GO:0005634 C nucleus
GO:0005643 C nuclear pore
GO:0005737 C cytoplasm
GO:0006611 P protein export from nucleus
GO:0006810 P transport
GO:0008536 F small GTPase binding
GO:0015031 P protein transport
FPKM:2.57 TPM:1.34
2272 A_BomoMSG_c12513_g1_i1
332bp
FPKM:2.63 TPM:1.37
2273 A_BomoMSG_c12514_g1_i1
566bp
FPKM:3.46 TPM:1.80
2274 A_BomoMSG_c12516_g1_i1
376bp
 LOW_QUALITY_PROTEIN:_ATPase_WRNIP1_[Bombyx_mori]
FPKM:2.39 TPM:1.24
2275 A_BomoMSG_c12519_g1_i1
512bp
 C-type_lectin_10_precursor_[Bombyx_mori]
GO:0004872 F signaling receptor activity
GO:0004888 F transmembrane signaling receptor activity
GO:0005537 F mannose binding
GO:0005768 C endosome
GO:0005886 C plasma membrane
GO:0006897 P endocytosis
GO:0006898 P receptor-mediated endocytosis
GO:0007165 P signal transduction
GO:0009986 C cell surface
GO:0010008 C endosome membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030246 F carbohydrate binding
GO:0071222 P cellular response to lipopolysaccharide
GO:0071346 P cellular response to interferon-gamma
GO:0071353 P cellular response to interleukin-4
FPKM:2.98 TPM:1.55
2276 A_BomoMSG_c12521_g1_i1
236bp
 neuralized-like_protein_4_[Bombyx_mori]
FPKM:4.11 TPM:2.14
2277 A_BomoMSG_c12523_g1_i1
338bp
FPKM:5.74 TPM:2.99
2278 A_BomoMSG_c12524_g1_i1
255bp
 timeless_[Bombyx_mori]
FPKM:0.00 TPM:0.00
2279 A_BomoMSG_c12524_g1_i2
436bp
 timeless_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0048471 C perinuclear region of cytoplasm
GO:0048511 P rhythmic process
FPKM:2.10 TPM:1.09
2280 A_BomoMSG_c12525_g1_i1
233bp
 zinc_finger_protein_271_isoform_X1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
FPKM:9.21 TPM:4.79
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