SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/47701
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
2281 A_BomoMSG_c12526_g1_i1
562bp
 Mariner_Mos1_transposase_[Acromyrmex_echinatior]
FPKM:3.34 TPM:1.74
2282 A_BomoMSG_c12527_g1_i1
215bp
 PREDICTED:_NF-X1-type_zinc_finger_protein_NFXL1_[Papilio_xuthus]
FPKM:7.96 TPM:4.14
2283 A_BomoMSG_c12528_g1_i1
251bp
FPKM:8.23 TPM:4.28
2284 A_BomoMSG_c12530_g1_i1
273bp
 Mod_[Danaus_plexippus_plexippus]
FPKM:3.40 TPM:1.77
2285 A_BomoMSG_c12531_g1_i1
247bp
 lon_protease_homolog,_mitochondrial_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003697 F single-stranded DNA binding
GO:0004176 F ATP-dependent peptidase activity
GO:0004252 F serine-type endopeptidase activity
GO:0005524 F ATP binding
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0005777 C peroxisome
GO:0006508 P proteolysis
GO:0006515 P protein quality control for misfolded or incompletely synthesized proteins
GO:0007005 P mitochondrion organization
GO:0008233 F peptidase activity
GO:0008236 F serine-type peptidase activity
GO:0016787 F hydrolase activity
GO:0030163 P protein catabolic process
GO:0045732 P positive regulation of protein catabolic process
GO:0051131 P chaperone-mediated protein complex assembly
GO:0070361 F mitochondrial promoter sequence-specific DNA binding
FPKM:0.00 TPM:0.00
2286 A_BomoMSG_c12531_g1_i2
823bp
 lon_protease_homolog,_mitochondrial_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003697 F single-stranded DNA binding
GO:0004176 F ATP-dependent peptidase activity
GO:0004252 F serine-type endopeptidase activity
GO:0005524 F ATP binding
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0005777 C peroxisome
GO:0006508 P proteolysis
GO:0006515 P protein quality control for misfolded or incompletely synthesized proteins
GO:0007005 P mitochondrion organization
GO:0008233 F peptidase activity
GO:0008236 F serine-type peptidase activity
GO:0016787 F hydrolase activity
GO:0030163 P protein catabolic process
GO:0045732 P positive regulation of protein catabolic process
GO:0051131 P chaperone-mediated protein complex assembly
GO:0070361 F mitochondrial promoter sequence-specific DNA binding
FPKM:3.56 TPM:1.85
2287 A_BomoMSG_c12532_g1_i1
606bp
FPKM:22.83 TPM:11.88
2288 A_BomoMSG_c12533_g1_i1
906bp
FPKM:4.04 TPM:2.10
2289 A_BomoMSG_c12538_g1_i1
300bp
 uncharacterized_protein_C1orf112_homolog_isoform_X1_[Bombyx_mori]
FPKM:1.60 TPM:0.83
2290 A_BomoMSG_c12539_g1_i1
638bp
 uncharacterized_protein_LOC110386593_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004523 F RNA-DNA hybrid ribonuclease activity
GO:0004533 F exoribonuclease H activity
GO:0005198 F structural molecule activity
GO:0005622 C intracellular anatomical structure
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0008289 F lipid binding
GO:0015074 P DNA integration
GO:0016020 C membrane
GO:0016032 P viral process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0019012 C virion component
GO:0019013 C viral nucleocapsid
GO:0019028 C viral capsid
GO:0019076 P viral release from host cell
GO:0020002 C host cell plasma membrane
GO:0030430 C host cell cytoplasm
GO:0033644 C host cell membrane
GO:0039526 P modulation by virus of host apoptotic process
GO:0039651 P induction by virus of host cysteine-type endopeptidase activity involved in apoptotic process
GO:0039657 P suppression by virus of host gene expression
GO:0042025 C host cell nucleus
GO:0044174 C host cell endosome
GO:0046718 P viral entry into host cell
GO:0046872 F metal ion binding
GO:0055036 C virion membrane
GO:0071897 P DNA biosynthetic process
GO:0072494 C host multivesicular body
GO:0075713 P establishment of integrated proviral latency
GO:0075732 P viral penetration into host nucleus
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
FPKM:1.60 TPM:0.83
2291 A_BomoMSG_c1253_g1_i1
207bp
FPKM:4.96 TPM:2.58
2292 A_BomoMSG_c12542_g1_i1
228bp
 histone-lysine_N-methyltransferase,_H3_lysine-79_specific_isoform_X6_[Bombyx_mori]
FPKM:15.01 TPM:7.81
2293 A_BomoMSG_c12543_g1_i1
940bp
 PREDICTED:_centromere-associated_protein_E-like_isoform_X1_[Amyelois_transitella]
FPKM:2.80 TPM:1.46
2294 A_BomoMSG_c12544_g1_i1
217bp
FPKM:0.86 TPM:0.45
2295 A_BomoMSG_c12545_g1_i1
213bp
FPKM:2.73 TPM:1.42
2296 A_BomoMSG_c12547_g1_i1
315bp
FPKM:3.27 TPM:1.70
2297 A_BomoMSG_c12547_g2_i1
229bp
 A-kinase_anchor_protein_17A_isoform_X3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0007165 P signal transduction
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0042113 P B cell activation
GO:0043484 P regulation of RNA splicing
GO:0044822 F RNA binding
GO:0051018 F protein kinase A binding
FPKM:5.19 TPM:2.70
2298 A_BomoMSG_c12548_g1_i1
281bp
FPKM:4.11 TPM:2.14
2299 A_BomoMSG_c1254_g1_i1
520bp
 lipopolysaccharide-induced_tumor_necrosis_factor-alpha_factor_homolog_[Bombyx_mori]
GO:0005125 F cytokine activity
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
FPKM:30.93 TPM:16.09
2300 A_BomoMSG_c12550_g1_i1
338bp
FPKM:4.78 TPM:2.49
2301 A_BomoMSG_c12553_g1_i1
350bp
FPKM:6.59 TPM:3.43
2302 A_BomoMSG_c12555_g1_i1
228bp
FPKM:7.50 TPM:3.90
2303 A_BomoMSG_c12558_g1_i1
227bp
FPKM:6.83 TPM:3.56
2304 A_BomoMSG_c12559_g1_i1
221bp
FPKM:5.72 TPM:2.98
2305 A_BomoMSG_c1255_g1_i1
278bp
 hemocytin_[Bombyx_mori]
GO:0007155 P cell adhesion
GO:0030246 F carbohydrate binding
FPKM:1.40 TPM:0.73
2306 A_BomoMSG_c12562_g1_i1
203bp
FPKM:2.11 TPM:1.10
2307 A_BomoMSG_c12563_g1_i1
379bp
 hatching_enzyme-like_II_isoform_X1_[Bombyx_mori]
GO:0004222 F metalloendopeptidase activity
GO:0005576 C extracellular region
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0008270 F zinc ion binding
GO:0016787 F hydrolase activity
GO:0043050 P pharyngeal pumping
GO:0046872 F metal ion binding
GO:0060465 P pharynx development
FPKM:2.36 TPM:1.23
2308 A_BomoMSG_c12564_g1_i1
210bp
 peroxidase_[Bombyx_mori]
FPKM:3.80 TPM:1.97
2309 A_BomoMSG_c12566_g1_i1
495bp
 oocyte_zinc_finger_protein_XlCOF6_[Bombyx_mori]
FPKM:5.90 TPM:3.07
2310 A_BomoMSG_c12569_g1_i1
208bp
 uncharacterized_protein_LOC101740799_[Bombyx_mori]
FPKM:6.84 TPM:3.56
previous next from show/47701

- SilkBase 1999-2023 -