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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
211 A_BomoMSG_c10253_g1_i1
205bp
 PREDICTED:_WD_repeat-containing_protein_6_[Amyelois_transitella]
GO:0003674 F molecular_function
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0008033 P tRNA processing
GO:0032456 P endocytic recycling
FPKM:3.07 TPM:1.59
212 A_BomoMSG_c10254_g1_i1
285bp
FPKM:3.99 TPM:2.07
213 A_BomoMSG_c10255_g1_i1
447bp
 gastrula_zinc_finger_protein_XlCGF57.1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
GO:0048813 P dendrite morphogenesis
FPKM:3.23 TPM:1.68
214 A_BomoMSG_c10256_g1_i1
1628bp
 LOW_QUALITY_PROTEIN:_NADH_dehydrogenase_[ubiquinone]_flavoprotein_1,_mitochondrial-like_[Bombyx_mori]
GO:0003954 F NADH dehydrogenase activity
GO:0005515 F protein binding
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005747 C mitochondrial respiratory chain complex I
GO:0008137 F NADH dehydrogenase (ubiquinone) activity
GO:0009060 P aerobic respiration
GO:0010181 F FMN binding
GO:0016020 C membrane
GO:0016491 F oxidoreductase activity
GO:0016651 F oxidoreductase activity, acting on NAD(P)H
GO:0046872 F metal ion binding
GO:0051287 F NAD binding
GO:0051536 F iron-sulfur cluster binding
GO:0051539 F 4 iron, 4 sulfur cluster binding
GO:0055114 P obsolete oxidation-reduction process
GO:0070469 C respirasome
FPKM:63.59 TPM:33.08
215 A_BomoMSG_c10258_g1_i1
645bp
 uncharacterized_protein_LOC101744608_[Bombyx_mori]
GO:0004129 F cytochrome-c oxidase activity
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005746 C mitochondrial respirasome
GO:0006091 P generation of precursor metabolites and energy
GO:0009055 F electron transfer activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:1902600 P proton transmembrane transport
FPKM:35.35 TPM:18.39
216 A_BomoMSG_c10258_g1_i2
559bp
 uncharacterized_protein_LOC101744608_[Bombyx_mori]
GO:0004129 F cytochrome-c oxidase activity
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005746 C mitochondrial respirasome
GO:0006091 P generation of precursor metabolites and energy
GO:0009055 F electron transfer activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:1902600 P proton transmembrane transport
FPKM:177.04 TPM:92.10
217 A_BomoMSG_c10261_g1_i1
236bp
 U1_small_nuclear_ribonucleoprotein_A_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005685 C U1 snRNP
GO:0005686 C U2 snRNP
GO:0006397 P mRNA processing
GO:0007539 P primary sex determination, soma
GO:0008266 F poly(U) RNA binding
GO:0008380 P RNA splicing
GO:0017069 F snRNA binding
GO:0019099 P female germ-line sex determination
GO:0030529 C ribonucleoprotein complex
GO:0030532 C small nuclear ribonucleoprotein complex
GO:0030619 F U1 snRNA binding
GO:0030620 F U2 snRNA binding
GO:0035614 F snRNA stem-loop binding
GO:0042802 F identical protein binding
GO:0043234 C protein-containing complex
GO:0048477 P oogenesis
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
GO:0097158 F pre-mRNA intronic pyrimidine-rich binding
FPKM:5.48 TPM:2.85
218 A_BomoMSG_c10262_g1_i1
811bp
 cytochrome_c_oxidase_copper_chaperone_[Bombyx_mori]
GO:0005507 F copper ion binding
GO:0005739 C mitochondrion
GO:0005758 C mitochondrial intermembrane space
GO:0006825 P copper ion transport
GO:0016531 F copper chaperone activity
GO:0046872 F metal ion binding
FPKM:51.37 TPM:26.72
219 A_BomoMSG_c10263_g1_i1
261bp
FPKM:11.27 TPM:5.87
220 A_BomoMSG_c10264_g1_i1
229bp
FPKM:0.74 TPM:0.39
221 A_BomoMSG_c10265_g1_i1
352bp
FPKM:5.94 TPM:3.09
222 A_BomoMSG_c10265_g1_i2
262bp
FPKM:0.00 TPM:0.00
223 A_BomoMSG_c10266_g1_i1
532bp
 uncharacterized_protein_LOC101746345_isoform_X1_[Bombyx_mori]
FPKM:1.73 TPM:0.90
224 A_BomoMSG_c10267_g1_i1
238bp
FPKM:8.72 TPM:4.54
225 A_BomoMSG_c10268_g1_i1
475bp
 facilitated_trehalose_transporter_Tret1-like_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0008643 P carbohydrate transport
GO:0015574 F trehalose transmembrane transporter activity
GO:0015771 P trehalose transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0022891 F transmembrane transporter activity
GO:0055085 P transmembrane transport
FPKM:1.47 TPM:0.77
226 A_BomoMSG_c10268_g1_i2
361bp
 facilitated_trehalose_transporter_Tret1-like_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0005886 C plasma membrane
GO:0015574 F trehalose transmembrane transporter activity
GO:0015771 P trehalose transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0022891 F transmembrane transporter activity
GO:0055085 P transmembrane transport
FPKM:0.00 TPM:0.00
227 A_BomoMSG_c10269_g1_i1
309bp
 G-protein_coupled_receptor_Mth2_[Bombyx_mori]
GO:0000302 P response to reactive oxygen species
GO:0004871 F obsolete signal transducer activity
GO:0004888 F transmembrane signaling receptor activity
GO:0004930 F G protein-coupled receptor activity
GO:0005515 F protein binding
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006836 P neurotransmitter transport
GO:0006887 P exocytosis
GO:0006950 P response to stress
GO:0006979 P response to oxidative stress
GO:0007165 P signal transduction
GO:0007166 P cell surface receptor signaling pathway
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0007568 P aging
GO:0008340 P determination of adult lifespan
GO:0008528 F G protein-coupled peptide receptor activity
GO:0009408 P response to heat
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016079 P synaptic vesicle exocytosis
GO:0042277 F peptide binding
GO:0042594 P response to starvation
GO:0045202 C synapse
GO:0098793 C presynapse
GO:1901562 P response to paraquat
FPKM:2.26 TPM:1.18
228 A_BomoMSG_c1026_g1_i1
237bp
 unnamed_protein_product,_partial_[Bombyx_mori]
FPKM:5.42 TPM:2.82
229 A_BomoMSG_c10270_g1_i1
310bp
FPKM:4.87 TPM:2.53
230 A_BomoMSG_c10271_g1_i1
610bp
FPKM:0.91 TPM:0.47
231 A_BomoMSG_c10271_g1_i2
220bp
FPKM:0.83 TPM:0.43
232 A_BomoMSG_c10271_g1_i3
221bp
FPKM:0.00 TPM:0.00
233 A_BomoMSG_c10272_g1_i1
299bp
FPKM:2.01 TPM:1.05
234 A_BomoMSG_c10273_g1_i1
330bp
FPKM:2.66 TPM:1.39
235 A_BomoMSG_c10274_g1_i1
1625bp
 RNA-binding_protein_28_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005730 C nucleolus
GO:0006397 P mRNA processing
GO:0008150 P biological_process
GO:0008380 P RNA splicing
GO:0044822 F RNA binding
FPKM:24.39 TPM:12.69
236 A_BomoMSG_c10276_g1_i1
333bp
 disks_large_homolog_5_isoform_X2_[Bombyx_mori]
FPKM:3.93 TPM:2.04
237 A_BomoMSG_c10277_g1_i1
264bp
 uncharacterized_protein_LOC101744110_isoform_X6_[Bombyx_mori]
FPKM:0.52 TPM:0.27
238 A_BomoMSG_c10278_g1_i1
387bp
 rho_GTPase-activating_protein_conundrum_isoform_X2_[Bombyx_mori]
FPKM:4.05 TPM:2.11
239 A_BomoMSG_c10279_g1_i1
685bp
 uncharacterized_protein_LOC101739832_[Bombyx_mori]
FPKM:4.03 TPM:2.10
240 A_BomoMSG_c10281_g1_i1
207bp
FPKM:37.73 TPM:19.63
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