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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
181 A_BomoMSG_c10221_g1_i1
238bp
FPKM:4.69 TPM:2.44
182 A_BomoMSG_c10222_g1_i1
1676bp
 renin_receptor_isoform_X2_[Bombyx_mori]
GO:0004872 F signaling receptor activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:65.06 TPM:33.84
183 A_BomoMSG_c10223_g1_i1
944bp
 eukaryotic_translation_elongation_factor_1_epsilon-1_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006412 P translation
GO:0008285 P negative regulation of cell population proliferation
GO:0043065 P positive regulation of apoptotic process
GO:0043517 P positive regulation of DNA damage response, signal transduction by p53 class mediator
FPKM:37.86 TPM:19.70
184 A_BomoMSG_c10224_g1_i1
242bp
 hypothetical_protein_[Acinetobacter_baumannii]
FPKM:7.07 TPM:3.68
185 A_BomoMSG_c10224_g1_i2
230bp
 hypothetical_protein_[Acinetobacter_baumannii]
FPKM:0.00 TPM:0.00
186 A_BomoMSG_c10225_g1_i1
263bp
FPKM:3.17 TPM:1.65
187 A_BomoMSG_c10226_g1_i1
370bp
FPKM:1.63 TPM:0.85
188 A_BomoMSG_c10227_g1_i1
415bp
 uncharacterized_protein_LOC101737300_[Bombyx_mori]
FPKM:2.94 TPM:1.53
189 A_BomoMSG_c10228_g1_i1
766bp
 arf-GAP_with_SH3_domain,_ANK_repeat_and_PH_domain-containing_protein_2_isoform_X1_[Bombyx_mori]
GO:0005096 F GTPase activator activity
GO:0005737 C cytoplasm
GO:0016020 C membrane
GO:0030030 P cell projection organization
GO:0043547 P positive regulation of GTPase activity
GO:0046872 F metal ion binding
GO:0060271 P cilium assembly
FPKM:3.31 TPM:1.72
190 A_BomoMSG_c1022_g1_i1
250bp
FPKM:2.97 TPM:1.54
191 A_BomoMSG_c10232_g1_i1
223bp
 PREDICTED:_craniofacial_development_protein_2-like,_partial_[Papilio_machaon]
FPKM:3.99 TPM:2.07
192 A_BomoMSG_c10233_g1_i1
492bp
FPKM:2.98 TPM:1.55
193 A_BomoMSG_c10234_g1_i1
663bp
 peptidyl-alpha-hydroxyglycine_alpha-amidating_lyase_1_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004497 F monooxygenase activity
GO:0004504 F peptidylglycine monooxygenase activity
GO:0004598 F peptidylamidoglycolate lyase activity
GO:0005507 F copper ion binding
GO:0006518 P peptide metabolic process
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016491 F oxidoreductase activity
GO:0016715 F oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen
GO:0016829 F lyase activity
GO:0030658 C transport vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0046872 F metal ion binding
GO:0055114 P obsolete oxidation-reduction process
FPKM:4.44 TPM:2.31
194 A_BomoMSG_c10235_g1_i1
699bp
FPKM:3.05 TPM:1.59
195 A_BomoMSG_c10238_g1_i1
508bp
FPKM:1.51 TPM:0.78
196 A_BomoMSG_c10239_g1_i1
2237bp
 heterogeneous_nuclear_ribonucleoprotein_Q_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001649 P osteoblast differentiation
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0006397 P mRNA processing
GO:0007623 P circadian rhythm
GO:0008143 F poly(A) binding
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0017148 P negative regulation of translation
GO:0030529 C ribonucleoprotein complex
GO:0043025 C neuronal cell body
GO:0043231 C intracellular membrane-bounded organelle
GO:0044822 F RNA binding
GO:0045727 P positive regulation of translation
GO:0048027 F mRNA 5'-UTR binding
GO:0070934 P CRD-mediated mRNA stabilization
GO:0070937 C CRD-mediated mRNA stability complex
GO:0071013 C catalytic step 2 spliceosome
GO:0071204 C histone pre-mRNA 3'end processing complex
GO:0071346 P cellular response to interferon-gamma
GO:0090367 P negative regulation of mRNA modification
GO:0097452 C GAIT complex
GO:1990635 C proximal dendrite
FPKM:165.37 TPM:86.03
197 A_BomoMSG_c10239_g1_i2
2030bp
 heterogeneous_nuclear_ribonucleoprotein_Q_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001649 P osteoblast differentiation
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0006397 P mRNA processing
GO:0007623 P circadian rhythm
GO:0008143 F poly(A) binding
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0017148 P negative regulation of translation
GO:0030529 C ribonucleoprotein complex
GO:0043025 C neuronal cell body
GO:0043231 C intracellular membrane-bounded organelle
GO:0044822 F RNA binding
GO:0045727 P positive regulation of translation
GO:0048027 F mRNA 5'-UTR binding
GO:0070934 P CRD-mediated mRNA stabilization
GO:0070937 C CRD-mediated mRNA stability complex
GO:0071013 C catalytic step 2 spliceosome
GO:0071204 C histone pre-mRNA 3'end processing complex
GO:0071346 P cellular response to interferon-gamma
GO:0090367 P negative regulation of mRNA modification
GO:0097452 C GAIT complex
GO:1990635 C proximal dendrite
FPKM:68.10 TPM:35.43
198 A_BomoMSG_c1023_g1_i1
441bp
 uncharacterized_protein_LOC101738149_[Bombyx_mori]
GO:0001525 P angiogenesis
GO:0001669 C acrosomal vesicle
GO:0001953 P negative regulation of cell-matrix adhesion
GO:0004222 F metalloendopeptidase activity
GO:0005178 F integrin binding
GO:0005515 F protein binding
GO:0005912 C adherens junction
GO:0006508 P proteolysis
GO:0007155 P cell adhesion
GO:0007229 P integrin-mediated signaling pathway
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0008270 F zinc ion binding
GO:0008584 P male gonad development
GO:0009986 C cell surface
GO:0012505 C endomembrane system
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0017124 F SH3 domain binding
GO:0030054 C cell junction
GO:0030308 P negative regulation of cell growth
GO:0030336 P negative regulation of cell migration
GO:0030574 P collagen catabolic process
GO:0031410 C cytoplasmic vesicle
GO:0042246 P tissue regeneration
GO:0042995 C cell projection
GO:0045087 P innate immune response
GO:0046872 F metal ion binding
GO:0060317 P cardiac epithelial to mesenchymal transition
GO:0070062 C extracellular exosome
GO:0070528 P protein kinase C signaling
GO:1900121 P negative regulation of receptor binding
FPKM:4.74 TPM:2.46
199 A_BomoMSG_c10241_g1_i1
513bp
 membrane-bound_transcription_factor_site-1_protease,_partial_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0004175 F endopeptidase activity
GO:0004252 F serine-type endopeptidase activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0005795 C Golgi stack
GO:0006508 P proteolysis
GO:0006629 P lipid metabolic process
GO:0007040 P lysosome organization
GO:0008202 P steroid metabolic process
GO:0008203 P cholesterol metabolic process
GO:0008233 F peptidase activity
GO:0008236 F serine-type peptidase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0042990 P obsolete regulation of transcription factor import into nucleus
FPKM:2.97 TPM:1.55
200 A_BomoMSG_c10242_g1_i1
552bp
FPKM:3.73 TPM:1.94
201 A_BomoMSG_c10242_g2_i1
265bp
FPKM:3.63 TPM:1.89
202 A_BomoMSG_c10243_g1_i1
412bp
FPKM:1.83 TPM:0.95
203 A_BomoMSG_c10244_g1_i1
333bp
FPKM:2.62 TPM:1.36
204 A_BomoMSG_c10246_g1_i1
295bp
FPKM:2.89 TPM:1.50
205 A_BomoMSG_c10247_g1_i1
295bp
 PREDICTED:_jmjC_domain-containing_histone_demethylation_protein_1_[Papilio_machaon]
GO:0003677 F DNA binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007379 P segment specification
GO:0007526 P larval somatic muscle development
GO:0008270 F zinc ion binding
GO:0016491 F oxidoreductase activity
GO:0016568 P chromatin organization
GO:0019005 C SCF ubiquitin ligase complex
GO:0019233 P sensory perception of pain
GO:0031146 P SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
GO:0031519 C PcG protein complex
GO:0033522 P histone H2A ubiquitination
GO:0034647 F histone H3-tri/di/monomethyl-lysine-4 demethylase activity
GO:0034721 P histone H3-K4 demethylation, trimethyl-H3-K4-specific
GO:0046872 F metal ion binding
GO:0051213 F dioxygenase activity
GO:0051864 F histone H3-methyl-lysine-36 demethylase activity
GO:0055114 P obsolete oxidation-reduction process
GO:0070544 P histone H3-K36 demethylation
FPKM:4.54 TPM:2.36
206 A_BomoMSG_c10248_g1_i1
828bp
 uncharacterized_protein_LOC101747215_[Bombyx_mori]
GO:0005515 F protein binding
FPKM:1.77 TPM:0.92
207 A_BomoMSG_c10250_g1_i1
247bp
 uncharacterized_protein_LOC101737479_[Bombyx_mori]
FPKM:0.18 TPM:0.09
208 A_BomoMSG_c10250_g1_i2
325bp
 uncharacterized_protein_LOC101737479_[Bombyx_mori]
FPKM:4.69 TPM:2.44
209 A_BomoMSG_c10251_g1_i1
467bp
FPKM:5.67 TPM:2.95
210 A_BomoMSG_c10252_g1_i1
378bp
FPKM:3.42 TPM:1.78
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