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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
2071 A_BomoMSG_c12287_g1_i3
443bp
 WD_repeat-containing_protein_81_[Bombyx_mori]
FPKM:1.23 TPM:0.64
2072 A_BomoMSG_c12288_g1_i1
256bp
FPKM:2.81 TPM:1.46
2073 A_BomoMSG_c12289_g1_i1
370bp
FPKM:3.27 TPM:1.70
2074 A_BomoMSG_c12290_g1_i1
338bp
 GATA_zinc_finger_domain-containing_protein_14-like_[Bombyx_mori]
FPKM:3.83 TPM:1.99
2075 A_BomoMSG_c12291_g1_i1
236bp
 LOW_QUALITY_PROTEIN:_uncharacterized_protein_KIAA1109_[Bombyx_mori]
GO:0001558 P regulation of cell growth
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0006629 P lipid metabolic process
GO:0007283 P spermatogenesis
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0019915 P lipid storage
GO:0045444 P fat cell differentiation
GO:0051647 P nucleus localization
GO:0060612 P adipose tissue development
FPKM:4.80 TPM:2.50
2076 A_BomoMSG_c12292_g1_i1
433bp
 uncharacterized_protein_LOC101738364_[Bombyx_mori]
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0016787 F hydrolase activity
FPKM:4.02 TPM:2.09
2077 A_BomoMSG_c12293_g1_i1
265bp
 mediator_of_RNA_polymerase_II_transcription_subunit_1_[Bombyx_mori]
FPKM:4.67 TPM:2.43
2078 A_BomoMSG_c12294_g1_i1
378bp
FPKM:2.37 TPM:1.23
2079 A_BomoMSG_c12295_g1_i1
422bp
 PREDICTED:_uncharacterized_protein_LOC106713145_[Papilio_machaon]
FPKM:1.98 TPM:1.03
2080 A_BomoMSG_c12297_g1_i1
555bp
FPKM:2.37 TPM:1.23
2081 A_BomoMSG_c12298_g1_i1
287bp
 WD_repeat-containing_protein_43_[Bombyx_mori]
FPKM:39.31 TPM:20.45
2082 A_BomoMSG_c12299_g1_i1
244bp
FPKM:2.52 TPM:1.31
2083 A_BomoMSG_c1229_g1_i1
277bp
 Retrotransposable_element_Tf2_155_kDa_protein_type_1_[Papilio_machaon]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005575 C cellular_component
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:0.47 TPM:0.24
2084 A_BomoMSG_c122_g1_i1
384bp
 LOW_QUALITY_PROTEIN:_sugar_transporter_SWEET1_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0007431 P salivary gland development
GO:0008643 P carbohydrate transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0034219 P carbohydrate transmembrane transport
GO:0051119 F sugar transmembrane transporter activity
FPKM:49.70 TPM:25.85
2085 A_BomoMSG_c12301_g1_i1
848bp
 microprocessor_complex_subunit_DGCR8_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0003725 F double-stranded RNA binding
GO:0004525 F ribonuclease III activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0015630 C microtubule cytoskeleton
GO:0020037 F heme binding
GO:0031053 P primary miRNA processing
GO:0042803 F protein homodimerization activity
GO:0046872 F metal ion binding
GO:0070877 C microprocessor complex
GO:0070878 F primary miRNA binding
GO:0072091 P regulation of stem cell proliferation
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
FPKM:3.09 TPM:1.61
2086 A_BomoMSG_c12302_g1_i1
273bp
 non-LTR_retrotransposon_R1Bmks_ORF2_protein_[Bombyx_mori]
FPKM:2.91 TPM:1.52
2087 A_BomoMSG_c12303_g1_i1
430bp
 Rho_GTPase-activating_protein_39_[Operophtera_brumata]
GO:0005096 F GTPase activator activity
GO:0005634 C nucleus
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0007165 P signal transduction
GO:0043547 P positive regulation of GTPase activity
GO:0051056 P regulation of small GTPase mediated signal transduction
FPKM:4.49 TPM:2.34
2088 A_BomoMSG_c12305_g1_i1
380bp
FPKM:9.38 TPM:4.88
2089 A_BomoMSG_c12306_g1_i1
347bp
 vacuolar_protein_sorting-associated_protein_8_homolog_[Bombyx_mori]
FPKM:4.87 TPM:2.53
2090 A_BomoMSG_c12307_g1_i1
458bp
 uncharacterized_protein_LOC105842887_[Bombyx_mori]
FPKM:3.03 TPM:1.58
2091 A_BomoMSG_c12307_g1_i2
420bp
 uncharacterized_protein_LOC105842887_[Bombyx_mori]
FPKM:0.76 TPM:0.39
2092 A_BomoMSG_c12308_g1_i1
242bp
 reverse_transcriptase_-_silkworm_transposon_Pao
FPKM:1.29 TPM:0.67
2093 A_BomoMSG_c12308_g1_i2
222bp
 reverse_transcriptase_-_silkworm_transposon_Pao
FPKM:5.65 TPM:2.94
2094 A_BomoMSG_c12309_g1_i1
567bp
FPKM:3.45 TPM:1.79
2095 A_BomoMSG_c12310_g1_i1
358bp
FPKM:3.17 TPM:1.65
2096 A_BomoMSG_c12312_g1_i1
546bp
 myoneurin_isoform_X2_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
FPKM:1.97 TPM:1.02
2097 A_BomoMSG_c12314_g1_i1
276bp
FPKM:7.59 TPM:3.95
2098 A_BomoMSG_c12315_g1_i1
213bp
FPKM:11.46 TPM:5.96
2099 A_BomoMSG_c12316_g1_i1
469bp
 uncharacterized_protein_LOC101744657_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0042594 P response to starvation
GO:0044351 P macropinocytosis
FPKM:3.94 TPM:2.05
2100 A_BomoMSG_c12319_g1_i1
331bp
 histone-lysine_N-methyltransferase_trithorax_[Bombyx_mori]
FPKM:1.99 TPM:1.03
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