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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1861 A_BomoMSG_c1205_g1_i2
371bp
 crossover_junction_endonuclease_EME1_isoform_X2_[Bombyx_mori]
GO:0000790 C chromatin
GO:0003677 F DNA binding
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004520 F endodeoxyribonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005720 C heterochromatin
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0016787 F hydrolase activity
GO:0036297 P interstrand cross-link repair
GO:0046872 F metal ion binding
GO:0072429 P response to intra-S DNA damage checkpoint signaling
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:4.61 TPM:2.40
1862 A_BomoMSG_c12060_g1_i1
449bp
FPKM:3.01 TPM:1.56
1863 A_BomoMSG_c12061_g1_i1
301bp
 nuclear_pore_complex_protein_Nup205_[Bombyx_mori]
GO:0000059 P obsolete protein import into nucleus, docking
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005643 C nuclear pore
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006406 P mRNA export from nucleus
GO:0006409 P tRNA export from nucleus
GO:0006810 P transport
GO:0006913 P nucleocytoplasmic transport
GO:0007077 P mitotic nuclear membrane disassembly
GO:0010827 P regulation of glucose transmembrane transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016032 P viral process
GO:0016925 P protein sumoylation
GO:0017056 F structural constituent of nuclear pore
GO:0019083 P viral transcription
GO:0031047 P gene silencing by RNA
GO:0031965 C nuclear membrane
GO:0034399 C nuclear periphery
GO:0044611 C nuclear pore inner ring
GO:0051028 P mRNA transport
GO:0051292 P nuclear pore complex assembly
GO:0075733 P intracellular transport of virus
GO:1900034 P regulation of cellular response to heat
FPKM:5.95 TPM:3.10
1864 A_BomoMSG_c12064_g1_i1
235bp
 centromere_protein_J_[Helicoverpa_armigera]
FPKM:4.85 TPM:2.52
1865 A_BomoMSG_c12066_g1_i1
512bp
FPKM:5.63 TPM:2.93
1866 A_BomoMSG_c12067_g1_i1
236bp
FPKM:5.48 TPM:2.85
1867 A_BomoMSG_c12068_g1_i1
274bp
FPKM:2.41 TPM:1.25
1868 A_BomoMSG_c1206_g1_i1
274bp
 bromodomain_and_WD_repeat-containing_protein_1_[Bombyx_mori]
FPKM:1.93 TPM:1.00
1869 A_BomoMSG_c12070_g1_i1
244bp
 bromodomain_adjacent_to_zinc_finger_domain_protein_1A_[Bombyx_mori]
GO:0004402 F histone acetyltransferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006261 P DNA-dependent DNA replication
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0008623 C CHRAC
GO:0016590 C ACF complex
GO:0046872 F metal ion binding
FPKM:6.30 TPM:3.28
1870 A_BomoMSG_c12071_g1_i1
324bp
 BRISC_and_BRCA1-A_complex_member_1_isoform_X2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006302 P double-strand break repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0010212 P response to ionizing radiation
GO:0016568 P chromatin organization
GO:0031572 P mitotic G2 DNA damage checkpoint signaling
GO:0045739 P positive regulation of DNA repair
GO:0051301 P cell division
GO:0070531 C BRCA1-A complex
GO:0070536 P protein K63-linked deubiquitination
GO:0070552 C BRISC complex
FPKM:5.86 TPM:3.05
1871 A_BomoMSG_c12072_g1_i1
703bp
 PREDICTED:_uncharacterized_protein_LOC105395769,_partial_[Plutella_xylostella]
GO:0000166 F nucleotide binding
GO:0000943 C retrotransposon nucleocapsid
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004523 F RNA-DNA hybrid ribonuclease activity
GO:0004540 F ribonuclease activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0019076 P viral release from host cell
GO:0032197 P transposition, RNA-mediated
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
FPKM:1.73 TPM:0.90
1872 A_BomoMSG_c12073_g1_i1
308bp
FPKM:1.14 TPM:0.59
1873 A_BomoMSG_c12074_g1_i1
574bp
FPKM:7.49 TPM:3.90
1874 A_BomoMSG_c12075_g1_i1
331bp
FPKM:6.29 TPM:3.27
1875 A_BomoMSG_c12079_g1_i1
679bp
 WD_repeat-containing_protein_19_isoform_X4_[Bombyx_mori]
GO:0000902 P cell morphogenesis
GO:0001701 P in utero embryonic development
GO:0003674 F molecular_function
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005929 C cilium
GO:0007224 P smoothened signaling pathway
GO:0008406 P gonad development
GO:0030030 P cell projection organization
GO:0030326 P embryonic limb morphogenesis
GO:0030991 C intraciliary transport particle A
GO:0031076 P embryonic camera-type eye development
GO:0031513 C non-motile cilium
GO:0031514 C motile cilium
GO:0032391 C photoreceptor connecting cilium
GO:0035721 P intraciliary retrograde transport
GO:0042384 P cilium assembly
GO:0042471 P ear morphogenesis
GO:0042995 C cell projection
GO:0048701 P embryonic cranial skeleton morphogenesis
GO:0050877 P nervous system process
GO:0055123 P digestive system development
GO:0060271 P cilium assembly
GO:0060830 P ciliary receptor clustering involved in smoothened signaling pathway
GO:0060831 P smoothened signaling pathway involved in dorsal/ventral neural tube patterning
GO:0061055 P myotome development
GO:0061512 P protein localization to cilium
FPKM:0.00 TPM:0.00
1876 A_BomoMSG_c12079_g1_i2
723bp
 WD_repeat-containing_protein_19_isoform_X4_[Bombyx_mori]
GO:0000902 P cell morphogenesis
GO:0001701 P in utero embryonic development
GO:0003674 F molecular_function
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005929 C cilium
GO:0007224 P smoothened signaling pathway
GO:0008406 P gonad development
GO:0030030 P cell projection organization
GO:0030326 P embryonic limb morphogenesis
GO:0030991 C intraciliary transport particle A
GO:0031076 P embryonic camera-type eye development
GO:0031513 C non-motile cilium
GO:0031514 C motile cilium
GO:0032391 C photoreceptor connecting cilium
GO:0035721 P intraciliary retrograde transport
GO:0042384 P cilium assembly
GO:0042471 P ear morphogenesis
GO:0042995 C cell projection
GO:0048701 P embryonic cranial skeleton morphogenesis
GO:0050877 P nervous system process
GO:0055123 P digestive system development
GO:0060271 P cilium assembly
GO:0060830 P ciliary receptor clustering involved in smoothened signaling pathway
GO:0060831 P smoothened signaling pathway involved in dorsal/ventral neural tube patterning
GO:0061055 P myotome development
GO:0061512 P protein localization to cilium
FPKM:2.09 TPM:1.09
1877 A_BomoMSG_c12079_g1_i3
601bp
 WD_repeat-containing_protein_19_isoform_X3_[Bombyx_mori]
GO:0000902 P cell morphogenesis
GO:0001701 P in utero embryonic development
GO:0003674 F molecular_function
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005929 C cilium
GO:0007224 P smoothened signaling pathway
GO:0008406 P gonad development
GO:0030030 P cell projection organization
GO:0030326 P embryonic limb morphogenesis
GO:0030991 C intraciliary transport particle A
GO:0031076 P embryonic camera-type eye development
GO:0031513 C non-motile cilium
GO:0031514 C motile cilium
GO:0032391 C photoreceptor connecting cilium
GO:0035721 P intraciliary retrograde transport
GO:0042384 P cilium assembly
GO:0042471 P ear morphogenesis
GO:0042995 C cell projection
GO:0048701 P embryonic cranial skeleton morphogenesis
GO:0050877 P nervous system process
GO:0055123 P digestive system development
GO:0060271 P cilium assembly
GO:0060830 P ciliary receptor clustering involved in smoothened signaling pathway
GO:0060831 P smoothened signaling pathway involved in dorsal/ventral neural tube patterning
GO:0061055 P myotome development
GO:0061512 P protein localization to cilium
FPKM:0.00 TPM:0.00
1878 A_BomoMSG_c12080_g1_i1
470bp
 tubulin_beta_chain_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005200 F structural constituent of cytoskeleton
GO:0005525 F GTP binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0007017 P microtubule-based process
FPKM:3.37 TPM:1.75
1879 A_BomoMSG_c12082_g1_i1
254bp
 patronin_isoform_X15_[Bombyx_mori]
GO:0000022 P mitotic spindle elongation
GO:0005516 F calmodulin binding
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0007026 P negative regulation of microtubule depolymerization
GO:0007049 P cell cycle
GO:0008017 F microtubule binding
GO:0030496 C midbody
GO:0030507 F spectrin binding
GO:0031175 P neuron projection development
GO:0051011 F microtubule minus-end binding
GO:0051013 P microtubule severing
FPKM:2.86 TPM:1.49
1880 A_BomoMSG_c12083_g1_i1
294bp
 reticulon-4-interacting_protein_1,_mitochondrial_[Bombyx_mori]
FPKM:0.00 TPM:0.00
1881 A_BomoMSG_c12083_g1_i2
356bp
 reticulon-4-interacting_protein_1,_mitochondrial_[Bombyx_mori]
FPKM:6.11 TPM:3.18
1882 A_BomoMSG_c12084_g1_i1
450bp
 cell_division_cycle_protein_16_homolog_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005680 C anaphase-promoting complex
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005819 C spindle
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005876 C spindle microtubule
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0007088 P regulation of mitotic nuclear division
GO:0008283 P cell population proliferation
GO:0016567 P protein ubiquitination
GO:0031145 P anaphase-promoting complex-dependent catabolic process
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0051301 P cell division
GO:0051436 P obsolete negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0051437 P obsolete positive regulation of ubiquitin-protein ligase activity involved in regulation of mitotic cell cycle transition
GO:0051439 P obsolete regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0070979 P protein K11-linked ubiquitination
FPKM:3.00 TPM:1.56
1883 A_BomoMSG_c12085_g1_i1
365bp
FPKM:0.84 TPM:0.44
1884 A_BomoMSG_c12087_g1_i1
248bp
 PREDICTED:_AT-rich_interactive_domain-containing_protein_3A_[Papilio_xuthus]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000976 F transcription cis-regulatory region binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0007411 P axon guidance
GO:0007431 P salivary gland development
GO:0007435 P salivary gland morphogenesis
GO:0007517 P muscle organ development
GO:0008049 P male courtship behavior
GO:0009880 P embryonic pattern specification
GO:0009952 P anterior/posterior pattern specification
GO:0010906 P regulation of glucose metabolic process
GO:0042063 P gliogenesis
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045924 P regulation of female receptivity
GO:0048477 P oogenesis
GO:0048813 P dendrite morphogenesis
GO:0070491 F DNA-binding transcription factor binding
FPKM:3.63 TPM:1.89
1885 A_BomoMSG_c12089_g1_i1
244bp
FPKM:8.19 TPM:4.26
1886 A_BomoMSG_c1208_g1_i1
435bp
FPKM:1.26 TPM:0.66
1887 A_BomoMSG_c12092_g1_i1
212bp
FPKM:1.84 TPM:0.96
1888 A_BomoMSG_c12093_g1_i1
592bp
 protein_SCO1_homolog,_mitochondrial_[Bombyx_mori]
GO:0001654 P eye development
GO:0001701 P in utero embryonic development
GO:0003012 P muscle system process
GO:0005507 F copper ion binding
GO:0005515 F protein binding
GO:0005654 C nucleoplasm
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005759 C mitochondrial matrix
GO:0006825 P copper ion transport
GO:0006878 P cellular copper ion homeostasis
GO:0008535 P respiratory chain complex IV assembly
GO:0014823 P response to activity
GO:0022904 P respiratory electron transport chain
GO:0030016 C myofibril
GO:0046872 F metal ion binding
GO:0055070 P copper ion homeostasis
GO:0055114 P obsolete oxidation-reduction process
FPKM:29.00 TPM:15.09
1889 A_BomoMSG_c12096_g1_i1
209bp
 endonuclease_and_reverse_transcriptase-like_protein_[Bombyx_mori]
FPKM:5.78 TPM:3.00
1890 A_BomoMSG_c12097_g1_i1
288bp
 adenomatous_polyposis_coli_protein_isoform_X2_[Bombyx_mori]
FPKM:3.47 TPM:1.80
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