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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1831 A_BomoMSG_c12019_g1_i2
270bp
FPKM:1.80 TPM:0.94
1832 A_BomoMSG_c12021_g1_i1
539bp
FPKM:5.39 TPM:2.80
1833 A_BomoMSG_c12022_g1_i1
382bp
 PREDICTED:_uncharacterized_protein_LOC106720343_[Papilio_machaon]
FPKM:3.10 TPM:1.61
1834 A_BomoMSG_c12025_g1_i1
749bp
 uncharacterized_protein_LOC101740358_isoform_X2_[Bombyx_mori]
GO:0005509 F calcium ion binding
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005615 C extracellular space
GO:0016023 C cytoplasmic vesicle
GO:0031410 C cytoplasmic vesicle
GO:0032579 C apical lamina of hyaline layer
GO:0033166 C hyaline layer
FPKM:1.80 TPM:0.94
1835 A_BomoMSG_c12026_g1_i1
666bp
 otoferlin-like_isoform_X5_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005509 F calcium ion binding
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0007605 P sensory perception of sound
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016079 P synaptic vesicle exocytosis
GO:0016323 C basolateral plasma membrane
GO:0030054 C cell junction
GO:0030672 C synaptic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0032403 F protein-containing complex binding
GO:0045177 C apical part of cell
GO:0045178 C basal part of cell
GO:0045202 C synapse
GO:0061025 P membrane fusion
GO:0090102 P cochlea development
FPKM:2.67 TPM:1.39
1836 A_BomoMSG_c12027_g1_i1
307bp
FPKM:1.14 TPM:0.60
1837 A_BomoMSG_c12029_g1_i1
333bp
FPKM:8.84 TPM:4.60
1838 A_BomoMSG_c12031_g1_i1
244bp
 uncharacterized_protein_K02A2.6_[Bombyx_mori]
FPKM:1.89 TPM:0.98
1839 A_BomoMSG_c12034_g1_i1
253bp
FPKM:1.15 TPM:0.60
1840 A_BomoMSG_c12035_g1_i1
282bp
FPKM:0.45 TPM:0.24
1841 A_BomoMSG_c12038_g1_i1
431bp
FPKM:2.56 TPM:1.33
1842 A_BomoMSG_c12038_g1_i2
337bp
FPKM:0.00 TPM:0.00
1843 A_BomoMSG_c12039_g1_i1
285bp
FPKM:2.66 TPM:1.38
1844 A_BomoMSG_c1203_g1_i1
260bp
FPKM:2.17 TPM:1.13
1845 A_BomoMSG_c12040_g1_i1
392bp
 cleavage_and_polyadenylation_specificity_factor_subunit_1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005847 C mRNA cleavage and polyadenylation specificity factor complex
GO:0006378 P mRNA polyadenylation
GO:0006379 P mRNA cleavage
GO:0006397 P mRNA processing
GO:0019899 F enzyme binding
GO:0035925 F mRNA 3'-UTR AU-rich region binding
FPKM:3.96 TPM:2.06
1846 A_BomoMSG_c12042_g1_i1
226bp
FPKM:2.31 TPM:1.20
1847 A_BomoMSG_c12044_g1_i1
509bp
FPKM:1.00 TPM:0.52
1848 A_BomoMSG_c12046_g1_i1
580bp
FPKM:3.06 TPM:1.59
1849 A_BomoMSG_c12047_g1_i1
488bp
FPKM:1.95 TPM:1.01
1850 A_BomoMSG_c12048_g1_i1
209bp
FPKM:0.00 TPM:0.00
1851 A_BomoMSG_c12048_g1_i2
359bp
FPKM:0.86 TPM:0.45
1852 A_BomoMSG_c12048_g2_i1
282bp
FPKM:4.53 TPM:2.36
1853 A_BomoMSG_c1204_g1_i1
245bp
 E3_ubiquitin-protein_ligase_HECTD1_isoform_X1_[Bombyx_mori]
FPKM:7.48 TPM:3.89
1854 A_BomoMSG_c12052_g1_i1
453bp
 DNA_helicase_MCM8_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000724 P double-strand break repair via homologous recombination
GO:0003674 F molecular_function
GO:0003677 F DNA binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007292 P female gamete generation
GO:0016787 F hydrolase activity
GO:0048232 P male gamete generation
GO:0097362 C MCM8-MCM9 complex
FPKM:2.18 TPM:1.13
1855 A_BomoMSG_c12053_g1_i1
294bp
FPKM:2.91 TPM:1.51
1856 A_BomoMSG_c12055_g1_i1
225bp
FPKM:1.56 TPM:0.81
1857 A_BomoMSG_c12056_g1_i1
698bp
 EGF_domain-specific_O-linked_N-acetylglucosamine_transferase_isoform_X1_[Bombyx_mori]
GO:0005783 C endoplasmic reticulum
GO:0005788 C endoplasmic reticulum lumen
GO:0006493 P protein O-linked glycosylation
GO:0008152 P metabolic process
GO:0008363 P larval chitin-based cuticle development
GO:0016262 F protein N-acetylglucosaminyltransferase activity
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0097363 F protein O-GlcNAc transferase activity
GO:0097370 P protein O-GlcNAcylation via threonine
FPKM:3.17 TPM:1.65
1858 A_BomoMSG_c12058_g1_i1
267bp
FPKM:4.08 TPM:2.12
1859 A_BomoMSG_c12059_g1_i1
531bp
FPKM:3.14 TPM:1.64
1860 A_BomoMSG_c1205_g1_i1
311bp
 crossover_junction_endonuclease_EME1_isoform_X2_[Bombyx_mori]
FPKM:0.00 TPM:0.00
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