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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1801 A_BomoMSG_c11988_g1_i1
337bp
FPKM:8.01 TPM:4.17
1802 A_BomoMSG_c11989_g1_i1
647bp
FPKM:2.05 TPM:1.07
1803 A_BomoMSG_c11991_g1_i1
434bp
 PR_domain_zinc_finger_protein_5_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
FPKM:3.17 TPM:1.65
1804 A_BomoMSG_c11993_g1_i1
256bp
FPKM:2.81 TPM:1.46
1805 A_BomoMSG_c11994_g1_i1
430bp
FPKM:0.00 TPM:0.00
1806 A_BomoMSG_c11994_g1_i2
502bp
FPKM:1.36 TPM:0.71
1807 A_BomoMSG_c11995_g1_i1
355bp
FPKM:5.26 TPM:2.74
1808 A_BomoMSG_c11997_g1_i1
210bp
FPKM:8.54 TPM:4.44
1809 A_BomoMSG_c11999_g1_i1
1417bp
 protoheme_IX_farnesyltransferase,_mitochondrial_[Bombyx_mori]
GO:0000266 P mitochondrial fission
GO:0004129 F cytochrome-c oxidase activity
GO:0004311 F farnesyltranstransferase activity
GO:0004659 F prenyltransferase activity
GO:0005739 C mitochondrion
GO:0006783 P heme biosynthetic process
GO:0006784 P heme A biosynthetic process
GO:0007005 P mitochondrion organization
GO:0008495 F protoheme IX farnesyltransferase activity
GO:0008535 P respiratory chain complex IV assembly
GO:0009060 P aerobic respiration
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0017004 P cytochrome complex assembly
GO:0018343 P protein farnesylation
GO:0031966 C mitochondrial membrane
GO:0045333 P cellular respiration
GO:0048034 P heme O biosynthetic process
GO:0070069 C cytochrome complex
GO:1902600 P proton transmembrane transport
FPKM:37.19 TPM:19.34
1810 A_BomoMSG_c11999_g1_i2
1399bp
 protoheme_IX_farnesyltransferase,_mitochondrial_[Bombyx_mori]
GO:0000266 P mitochondrial fission
GO:0004129 F cytochrome-c oxidase activity
GO:0004311 F farnesyltranstransferase activity
GO:0004659 F prenyltransferase activity
GO:0005739 C mitochondrion
GO:0006783 P heme biosynthetic process
GO:0006784 P heme A biosynthetic process
GO:0007005 P mitochondrion organization
GO:0008495 F protoheme IX farnesyltransferase activity
GO:0008535 P respiratory chain complex IV assembly
GO:0009060 P aerobic respiration
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0017004 P cytochrome complex assembly
GO:0018343 P protein farnesylation
GO:0031966 C mitochondrial membrane
GO:0045333 P cellular respiration
GO:0048034 P heme O biosynthetic process
GO:0070069 C cytochrome complex
GO:1902600 P proton transmembrane transport
FPKM:7.48 TPM:3.89
1811 A_BomoMSG_c12001_g1_i1
335bp
 uncharacterized_protein_LOC101744544_[Bombyx_mori]
FPKM:1.62 TPM:0.84
1812 A_BomoMSG_c12002_g1_i1
309bp
FPKM:2.64 TPM:1.37
1813 A_BomoMSG_c12003_g1_i1
459bp
 RNA-directed_DNA_polymerase_from_mobile_element_jockey_[Danaus_plexippus_plexippus]
FPKM:1.75 TPM:0.91
1814 A_BomoMSG_c12004_g1_i1
264bp
FPKM:0.52 TPM:0.27
1815 A_BomoMSG_c12005_g1_i1
285bp
FPKM:4.43 TPM:2.31
1816 A_BomoMSG_c12006_g1_i1
452bp
 PREDICTED:_uncharacterized_protein_LOC106137743_[Amyelois_transitella]
FPKM:3.57 TPM:1.86
1817 A_BomoMSG_c12007_g1_i1
292bp
 histone-lysine_N-methyltransferase_trithorax_[Bombyx_mori]
GO:0000123 C histone acetyltransferase complex
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003700 F DNA-binding transcription factor activity
GO:0004402 F histone acetyltransferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005700 C polytene chromosome
GO:0005875 C microtubule associated complex
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0007411 P axon guidance
GO:0008023 C transcription elongation factor complex
GO:0008157 F protein phosphatase 1 binding
GO:0008168 F methyltransferase activity
GO:0008270 F zinc ion binding
GO:0008354 P germ cell migration
GO:0016568 P chromatin organization
GO:0016571 P histone methylation
GO:0016573 P histone acetylation
GO:0016740 F transferase activity
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0019233 P sensory perception of pain
GO:0032259 P methylation
GO:0032968 P positive regulation of transcription elongation from RNA polymerase II promoter
GO:0035097 C histone methyltransferase complex
GO:0042800 F histone methyltransferase activity (H3-K4 specific)
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0043565 F sequence-specific DNA binding
GO:0043966 P histone H3 acetylation
GO:0044212 F transcription cis-regulatory region binding
GO:0044665 C MLL1/2 complex
GO:0046872 F metal ion binding
GO:0048096 P epigenetic maintenance of chromatin in transcription-competent conformation
GO:0051568 P histone H3-K4 methylation
GO:2001020 P regulation of response to DNA damage stimulus
FPKM:1.69 TPM:0.88
1818 A_BomoMSG_c12008_g1_i1
444bp
 F-box/LRR-repeat_protein_16_[Bombyx_mori]
GO:0005737 C cytoplasm
FPKM:3.67 TPM:1.91
1819 A_BomoMSG_c12009_g1_i1
350bp
 putative_Copia_protein_[Danaus_plexippus_plexippus]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:5.40 TPM:2.81
1820 A_BomoMSG_c12010_g1_i1
229bp
 fatty_acid_synthase_[Bombyx_mori]
FPKM:2.22 TPM:1.16
1821 A_BomoMSG_c12011_g1_i1
231bp
 uncharacterized_protein_LOC105842971_[Bombyx_mori]
FPKM:1.45 TPM:0.75
1822 A_BomoMSG_c12011_g1_i2
208bp
 uncharacterized_protein_LOC105842971_[Bombyx_mori]
FPKM:0.00 TPM:0.00
1823 A_BomoMSG_c12011_g2_i1
334bp
 uncharacterized_protein_LOC105842971_[Bombyx_mori]
FPKM:1.30 TPM:0.68
1824 A_BomoMSG_c12015_g1_i1
407bp
 synaptic_vesicle_glycoprotein_2B_[Bombyx_mori]
GO:0001504 P neurotransmitter uptake
GO:0001669 C acrosomal vesicle
GO:0005215 F transporter activity
GO:0006810 P transport
GO:0006836 P neurotransmitter transport
GO:0008021 C synaptic vesicle
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0030054 C cell junction
GO:0030672 C synaptic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0043195 C terminal bouton
GO:0045202 C synapse
GO:0055085 P transmembrane transport
FPKM:2.57 TPM:1.33
1825 A_BomoMSG_c12016_g1_i1
243bp
FPKM:3.82 TPM:1.99
1826 A_BomoMSG_c12017_g1_i1
612bp
FPKM:2.72 TPM:1.42
1827 A_BomoMSG_c12017_g2_i1
202bp
FPKM:1.07 TPM:0.56
1828 A_BomoMSG_c12018_g1_i1
2961bp
 eukaryotic_translation_initiation_factor_3_subunit_C_isoform_X1_[Bombyx_mori]
GO:0001731 P formation of translation preinitiation complex
GO:0003723 F RNA binding
GO:0003743 F translation initiation factor activity
GO:0005737 C cytoplasm
GO:0005852 C eukaryotic translation initiation factor 3 complex
GO:0006412 P translation
GO:0006413 P translational initiation
GO:0006446 P regulation of translational initiation
GO:0016282 C eukaryotic 43S preinitiation complex
GO:0031369 F translation initiation factor binding
GO:0033290 C eukaryotic 48S preinitiation complex
FPKM:135.38 TPM:70.43
1829 A_BomoMSG_c12018_g1_i2
2790bp
 eukaryotic_translation_initiation_factor_3_subunit_C_isoform_X1_[Bombyx_mori]
GO:0001731 P formation of translation preinitiation complex
GO:0003723 F RNA binding
GO:0003743 F translation initiation factor activity
GO:0005737 C cytoplasm
GO:0005852 C eukaryotic translation initiation factor 3 complex
GO:0006412 P translation
GO:0006413 P translational initiation
GO:0006446 P regulation of translational initiation
GO:0016282 C eukaryotic 43S preinitiation complex
GO:0031369 F translation initiation factor binding
GO:0033290 C eukaryotic 48S preinitiation complex
FPKM:33.82 TPM:17.59
1830 A_BomoMSG_c12019_g1_i1
232bp
FPKM:0.99 TPM:0.52
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