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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1351 A_BomoMSG_c11464_g1_i1
428bp
 zinc_finger_protein_91_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
FPKM:3.23 TPM:1.68
1352 A_BomoMSG_c11466_g1_i1
718bp
FPKM:6.12 TPM:3.18
1353 A_BomoMSG_c11468_g1_i1
250bp
FPKM:1.19 TPM:0.62
1354 A_BomoMSG_c11468_g1_i2
380bp
FPKM:5.47 TPM:2.85
1355 A_BomoMSG_c11469_g1_i1
221bp
 Modifier_of_mdg4_[Operophtera_brumata]
FPKM:0.82 TPM:0.43
1356 A_BomoMSG_c1146_g1_i1
591bp
FPKM:2.17 TPM:1.13
1357 A_BomoMSG_c11470_g1_i1
219bp
FPKM:7.55 TPM:3.93
1358 A_BomoMSG_c11472_g1_i1
334bp
FPKM:3.58 TPM:1.86
1359 A_BomoMSG_c11473_g1_i1
326bp
FPKM:1.70 TPM:0.89
1360 A_BomoMSG_c11473_g2_i1
226bp
FPKM:3.07 TPM:1.60
1361 A_BomoMSG_c11474_g1_i1
244bp
FPKM:8.82 TPM:4.59
1362 A_BomoMSG_c11476_g1_i1
339bp
 U3_small_nucleolar_ribonucleoprotein_protein_IMP3_isoform_X1_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0003735 F structural constituent of ribosome
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0015935 C small ribosomal subunit
GO:0019843 F rRNA binding
GO:0030515 F snoRNA binding
GO:0030529 C ribonucleoprotein complex
GO:0031167 P rRNA methylation
GO:0032040 C small-subunit processome
GO:0034457 C Mpp10 complex
GO:0042254 P ribosome biogenesis
GO:0042274 P ribosomal small subunit biogenesis
GO:0045903 P positive regulation of translational fidelity
FPKM:3.49 TPM:1.81
1363 A_BomoMSG_c11477_g1_i1
237bp
FPKM:3.39 TPM:1.76
1364 A_BomoMSG_c11479_g1_i1
270bp
FPKM:6.97 TPM:3.62
1365 A_BomoMSG_c11481_g1_i1
387bp
 putative_pol-like_protein_[Operophtera_brumata]
FPKM:4.05 TPM:2.11
1366 A_BomoMSG_c11483_g1_i1
273bp
FPKM:1.94 TPM:1.01
1367 A_BomoMSG_c11484_g1_i1
319bp
FPKM:3.19 TPM:1.66
1368 A_BomoMSG_c11486_g1_i1
271bp
FPKM:8.88 TPM:4.62
1369 A_BomoMSG_c11487_g1_i1
558bp
FPKM:5.58 TPM:2.90
1370 A_BomoMSG_c11488_g1_i1
532bp
 RNA-binding_protein_25_[Bombyx_mori]
FPKM:8.16 TPM:4.24
1371 A_BomoMSG_c1148_g1_i1
299bp
 retinol_dehydrogenase_11_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0008152 P metabolic process
GO:0009644 P response to high light intensity
GO:0010842 P retina layer formation
GO:0016491 F oxidoreductase activity
GO:0042462 P eye photoreceptor cell development
GO:0042572 P retinol metabolic process
GO:0052650 F NADP-retinol dehydrogenase activity
GO:0055114 P obsolete oxidation-reduction process
FPKM:2.41 TPM:1.25
1372 A_BomoMSG_c11490_g1_i1
1716bp
 ubiquitin_carboxyl-terminal_hydrolase_14_[Bombyx_mori]
GO:0000502 C proteasome complex
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0016020 C membrane
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0036459 F thiol-dependent deubiquitinase
GO:0070628 F proteasome binding
FPKM:27.30 TPM:14.20
1373 A_BomoMSG_c11492_g1_i1
271bp
FPKM:11.85 TPM:6.16
1374 A_BomoMSG_c11493_g1_i1
881bp
 snRNA-activating_protein_complex_subunit_1_[Bombyx_mori]
FPKM:2.70 TPM:1.41
1375 A_BomoMSG_c11494_g1_i1
400bp
FPKM:1.92 TPM:1.00
1376 A_BomoMSG_c11494_g2_i1
225bp
FPKM:0.00 TPM:0.00
1377 A_BomoMSG_c11495_g1_i1
310bp
FPKM:1.50 TPM:0.78
1378 A_BomoMSG_c11496_g1_i1
610bp
FPKM:1.59 TPM:0.83
1379 A_BomoMSG_c11496_g1_i2
298bp
FPKM:1.12 TPM:0.58
1380 A_BomoMSG_c11499_g1_i1
223bp
 Yokozuna_[Bombyx_mori]
FPKM:3.19 TPM:1.66
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