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Search Assembled RNA-Seq

No.

Name
Length

Chromosome No./Scaffold Id
Scaffold Length

BLAST (vs nr)

Gene ontology

Transcript
Level

1291

A_BomoMSG_c11402_g1_i1

723bp

Bomo_Chr18

39S_ribosomal_protein_L17,_mitochondrial_[Bombyx_mori]

GO:0000002	P	mitochondrial genome maintenance
GO:0003735	F	structural constituent of ribosome
GO:0005622	C	intracellular anatomical structure
GO:0005739	C	mitochondrion
GO:0005743	C	mitochondrial inner membrane
GO:0005762	C	mitochondrial large ribosomal subunit
GO:0005840	C	ribosome
GO:0006412	P	translation
GO:0019904	F	protein domain specific binding
GO:0030529	C	ribonucleoprotein complex
GO:0070125	P	mitochondrial translational elongation
GO:0070126	P	mitochondrial translational termination

FPKM:18.19 TPM:9.46

1292

A_BomoMSG_c11403_g1_i1

522bp

Bomo_Chr6

protein_unc-80_homolog_[Bombyx_mori]

GO:0005261	F	cation channel activity
GO:0016020	C	membrane
GO:0016021	C	integral component of membrane
GO:0034703	C	cation channel complex
GO:0045475	P	locomotor rhythm
GO:0055080	P	cation homeostasis
GO:0098655	P	cation transmembrane transport

FPKM:0.90 TPM:0.47

1293

A_BomoMSG_c11403_g1_i2

537bp

Bomo_Chr6

protein_unc-80_homolog_[Bombyx_mori]

GO:0005261	F	cation channel activity
GO:0016020	C	membrane
GO:0016021	C	integral component of membrane
GO:0034703	C	cation channel complex
GO:0045475	P	locomotor rhythm
GO:0055080	P	cation homeostasis
GO:0098655	P	cation transmembrane transport

FPKM:1.61 TPM:0.84

1294

A_BomoMSG_c11404_g1_i1

311bp

Bomo_Chr19

FPKM:2.98 TPM:1.55

1295

A_BomoMSG_c11405_g1_i1

1250bp

Bomo_Chr23

nuclear_receptor-binding_factor_2_[Bombyx_mori]

GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0005776	C	autophagosome
GO:0006351	P	transcription, DNA-templated
GO:0006355	P	regulation of transcription, DNA-templated
GO:0010506	P	regulation of autophagy
GO:0031410	C	cytoplasmic vesicle
GO:0034976	P	response to endoplasmic reticulum stress
GO:0035032	C	phosphatidylinositol 3-kinase complex, class III
GO:0043550	P	regulation of lipid kinase activity

FPKM:34.55 TPM:17.97

1296

A_BomoMSG_c11406_g1_i1

569bp

Bomo_Chr12

FPKM:3.17 TPM:1.65

1297

A_BomoMSG_c11407_g1_i1

604bp

Bomo_Chr11

FPKM:2.77 TPM:1.44

1298

A_BomoMSG_c11408_g1_i1

516bp

Bomo_Chr15

guanine_nucleotide-releasing_factor_2_isoform_X12_[Bombyx_mori]

GO:0005085	F	guanyl-nucleotide exchange factor activity
GO:0005088	F	guanyl-nucleotide exchange factor activity
GO:0005575	C	cellular_component
GO:0005622	C	intracellular anatomical structure
GO:0007264	P	small GTPase mediated signal transduction
GO:0007265	P	Ras protein signal transduction
GO:0007275	P	multicellular organism development
GO:0007525	P	somatic muscle development
GO:0016203	P	muscle attachment
GO:0017034	F	guanyl-nucleotide exchange factor activity
GO:0017124	F	SH3 domain binding
GO:0043087	P	regulation of GTPase activity
GO:0043547	P	positive regulation of GTPase activity
GO:0045214	P	sarcomere organization

FPKM:3.27 TPM:1.70

1299

A_BomoMSG_c11409_g1_i1

707bp

Bomo_Chr25

FPKM:1.29 TPM:0.67

1300

A_BomoMSG_c11409_g2_i1

310bp

Bomo_Chr25

decaprenyl-diphosphate_synthase_subunit_2_[Bombyx_mori]

FPKM:2.62 TPM:1.36

1301

A_BomoMSG_c11410_g1_i1

269bp

Bomo_Chr3

uncharacterized_protein_LOC101735649_[Bombyx_mori]

FPKM:0.35 TPM:0.18

1302

A_BomoMSG_c11410_g1_i2

492bp

Bomo_Chr3

uncharacterized_protein_LOC101735649_[Bombyx_mori]

FPKM:1.46 TPM:0.76

1303

A_BomoMSG_c11411_g1_i1

204bp

Bomo_Chr27

FPKM:7.26 TPM:3.78

1304

A_BomoMSG_c11412_g1_i1

228bp

Bomo_Chr22

FPKM:8.25 TPM:4.29

1305

A_BomoMSG_c11413_g1_i1

203bp

Bomo_Chr20

FPKM:7.38 TPM:3.84

1306

A_BomoMSG_c11414_g1_i1

244bp

Bomo_Chr22

PREDICTED:_tRNA-dihydrouridine(20a/20b)_synthase_[NAD(P)+]-like_[Papilio_machaon]

FPKM:5.67 TPM:2.95

1307

A_BomoMSG_c11415_g1_i1

664bp

Bomo_Chr8

uncharacterized_protein_LOC101746213_[Bombyx_mori]

FPKM:41.58 TPM:21.63

1308

A_BomoMSG_c11416_g1_i1

297bp

Bomo_Chr10

FPKM:2.04 TPM:1.06

1309

A_BomoMSG_c11417_g1_i1

213bp

Bomo_Chr4

FPKM:0.91 TPM:0.47

1310

A_BomoMSG_c11418_g1_i1

508bp

Bomo_Chr20

PREDICTED:_stress-associated_endoplasmic_reticulum_protein_2_[Plutella_xylostella]

GO:0003674	F	molecular_function
GO:0005783	C	endoplasmic reticulum
GO:0005789	C	endoplasmic reticulum membrane
GO:0006486	P	protein glycosylation
GO:0006810	P	transport
GO:0015031	P	protein transport
GO:0016020	C	membrane
GO:0016021	C	integral component of membrane
GO:0030968	P	endoplasmic reticulum unfolded protein response

FPKM:3.35 TPM:1.74

1311

A_BomoMSG_c11419_g1_i1

448bp

Bomo_Chr5

FPKM:2.82 TPM:1.46

1312

A_BomoMSG_c11420_g1_i1

785bp

Bomo_Chr26

uncharacterized_protein_LOC101740726_[Bombyx_mori]

FPKM:5.75 TPM:2.99

1313

A_BomoMSG_c11421_g1_i1

630bp

Bomo_Chr20

PREDICTED:_NF-X1-type_zinc_finger_protein_NFXL1_[Amyelois_transitella]

GO:0003700	F	DNA-binding transcription factor activity
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008270	F	zinc ion binding
GO:0016020	C	membrane
GO:0016021	C	integral component of membrane
GO:0046872	F	metal ion binding

FPKM:4.62 TPM:2.40

1314

A_BomoMSG_c11424_g1_i1

231bp

Bomo_Chr4

WD_repeat-containing_protein_35,_partial_[Bombyx_mori]

GO:0005737	C	cytoplasm
GO:0005813	C	centrosome
GO:0005815	C	microtubule organizing center
GO:0005856	C	cytoskeleton
GO:0005929	C	cilium
GO:0005930	C	axoneme
GO:0030030	P	cell projection organization
GO:0030991	C	intraciliary transport particle A
GO:0035091	F	phosphatidylinositol binding
GO:0035721	P	intraciliary retrograde transport
GO:0036064	C	ciliary basal body
GO:0042384	P	cilium assembly
GO:0042995	C	cell projection
GO:0061512	P	protein localization to cilium

FPKM:2.90 TPM:1.51

1315

A_BomoMSG_c11425_g1_i1

616bp

Bomo_Chr18

uncharacterized_protein_CG43867_[Bombyx_mori]

GO:0003674	F	molecular_function
GO:0005575	C	cellular_component
GO:0005856	C	cytoskeleton
GO:0008150	P	biological_process

FPKM:1.80 TPM:0.94

1316

A_BomoMSG_c11426_g1_i1

551bp

Bomo_Chr11

putative_receptor_tyrosine_phosphatase_type_r2a_[Danaus_plexippus_plexippus]

GO:0001700	P	embryonic development via the syncytial blastoderm
GO:0004721	F	phosphoprotein phosphatase activity
GO:0004725	F	protein tyrosine phosphatase activity
GO:0005001	F	transmembrane receptor protein tyrosine phosphatase activity
GO:0005515	F	protein binding
GO:0005875	C	microtubule associated complex
GO:0005886	C	plasma membrane
GO:0005925	C	focal adhesion
GO:0006470	P	protein dephosphorylation
GO:0007155	P	cell adhesion
GO:0007283	P	spermatogenesis
GO:0007399	P	nervous system development
GO:0007411	P	axon guidance
GO:0007412	P	axon target recognition
GO:0008045	P	motor neuron axon guidance
GO:0008201	F	heparin binding
GO:0008360	P	regulation of cell shape
GO:0008594	P	photoreceptor cell morphogenesis
GO:0016020	C	membrane
GO:0016021	C	integral component of membrane
GO:0016311	P	dephosphorylation
GO:0016787	F	hydrolase activity
GO:0016791	F	phosphatase activity
GO:0030424	C	axon
GO:0031290	P	retinal ganglion cell axon guidance
GO:0032093	F	SAM domain binding
GO:0035335	P	peptidyl-tyrosine dephosphorylation
GO:0045467	P	R7 cell development
GO:0048477	P	oogenesis
GO:0048675	P	axon extension
GO:0048841	P	regulation of axon extension involved in axon guidance
GO:0051124	P	synaptic assembly at neuromuscular junction
GO:1903386	P	negative regulation of homophilic cell adhesion

FPKM:2.39 TPM:1.24

1317

A_BomoMSG_c11427_g1_i1

243bp

Bomo_Chr4

dedicator_of_cytokinesis_protein_9_[Bombyx_mori]

GO:0005085	F	guanyl-nucleotide exchange factor activity
GO:0005089	F	guanyl-nucleotide exchange factor activity
GO:0005622	C	intracellular anatomical structure
GO:0007264	P	small GTPase mediated signal transduction
GO:0012505	C	endomembrane system
GO:0016020	C	membrane
GO:0017048	F	small GTPase binding
GO:0043547	P	positive regulation of GTPase activity