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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
4231 A_BomoASG_c15127_g1_i1
1163bp
 nuclear_hormone_receptor_FTZ-F1_beta_[Bombyx_mori]
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003707 F steroid hormone receptor activity
GO:0003712 F transcription coregulator activity
GO:0004879 F nuclear receptor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0009755 P hormone-mediated signaling pathway
GO:0009888 P tissue development
GO:0010906 P regulation of glucose metabolic process
GO:0016321 P female meiosis chromosome segregation
GO:0030522 P intracellular receptor signaling pathway
GO:0035211 P spermathecum morphogenesis
GO:0043401 P steroid hormone mediated signaling pathway
GO:0043565 F sequence-specific DNA binding
GO:0045433 P male courtship behavior, veined wing generated song production
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0060968 P obsolete regulation of gene silencing
GO:0090575 C RNA polymerase II transcription regulator complex
FPKM:2.16 TPM:1.66
4232 A_BomoASG_c15130_g1_i1
220bp
FPKM:6.76 TPM:5.19
4233 A_BomoASG_c15131_g1_i1
519bp
 PREDICTED:_uncharacterized_protein_LOC107174089_[Diuraphis_noxia]
FPKM:2.26 TPM:1.74
4234 A_BomoASG_c15132_g1_i1
233bp
FPKM:5.05 TPM:3.87
4235 A_BomoASG_c15134_g1_i1
253bp
FPKM:2.34 TPM:1.79
4236 A_BomoASG_c15136_g1_i1
286bp
FPKM:1.77 TPM:1.36
4237 A_BomoASG_c15139_g1_i1
275bp
 hypothetical_protein_RR48_02760_[Papilio_machaon]
FPKM:2.41 TPM:1.85
4238 A_BomoASG_c15139_g1_i2
311bp
 hypothetical_protein_RR48_02760_[Papilio_machaon]
FPKM:1.50 TPM:1.15
4239 A_BomoASG_c1513_g1_i1
205bp
 Vacuolar_protein_sorting-associated_protein_13C_[Operophtera_brumata]
FPKM:4.19 TPM:3.21
4240 A_BomoASG_c15140_g1_i1
1071bp
 5'-methylthioadenosine_phosphorylase_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006166 P purine ribonucleoside salvage
GO:0009116 P nucleoside metabolic process
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0016763 F pentosyltransferase activity
GO:0017061 F S-methyl-5-thioadenosine phosphorylase activity
GO:0019509 P L-methionine salvage from methylthioadenosine
GO:0043101 P purine-containing compound salvage
FPKM:18.41 TPM:14.12
4241 A_BomoASG_c15141_g1_i1
249bp
FPKM:6.69 TPM:5.13
4242 A_BomoASG_c15142_g1_i1
211bp
 reverse_transcriptase,_partial_[Bombyx_mandarina]
FPKM:5.74 TPM:4.40
4243 A_BomoASG_c15143_g1_i1
292bp
 PREDICTED:_uncharacterized_protein_LOC106134085_[Amyelois_transitella]
FPKM:3.40 TPM:2.61
4244 A_BomoASG_c15145_g1_i1
992bp
 long-chain-fatty-acid--CoA_ligase_5_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001676 P long-chain fatty acid metabolic process
GO:0003824 F catalytic activity
GO:0004467 F long-chain fatty acid-CoA ligase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005739 C mitochondrion
GO:0005741 C mitochondrial outer membrane
GO:0005743 C mitochondrial inner membrane
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016874 F ligase activity
GO:2001236 P regulation of extrinsic apoptotic signaling pathway
FPKM:0.99 TPM:0.76
4245 A_BomoASG_c15147_g1_i1
207bp
FPKM:0.00 TPM:0.00
4246 A_BomoASG_c15147_g1_i2
360bp
FPKM:2.00 TPM:1.53
4247 A_BomoASG_c15148_g1_i1
435bp
 anaphase-promoting_complex_subunit_5_isoform_X3_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005680 C anaphase-promoting complex
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0016567 P protein ubiquitination
GO:0019903 F protein phosphatase binding
GO:0051301 P cell division
GO:0070979 P protein K11-linked ubiquitination
FPKM:7.34 TPM:5.63
4248 A_BomoASG_c15149_g1_i1
322bp
FPKM:7.70 TPM:5.91
4249 A_BomoASG_c15151_g1_i1
680bp
 ubiquitin-conjugating_enzyme_E2_S_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000209 P protein polyubiquitination
GO:0004842 F ubiquitin-protein transferase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005680 C anaphase-promoting complex
GO:0005737 C cytoplasm
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0007049 P cell cycle
GO:0010458 P exit from mitosis
GO:0010994 P free ubiquitin chain polymerization
GO:0016567 P protein ubiquitination
GO:0016740 F transferase activity
GO:0031145 P anaphase-promoting complex-dependent catabolic process
GO:0031625 F ubiquitin protein ligase binding
GO:0051301 P cell division
GO:0051488 P positive regulation of ubiquitin protein ligase activity
GO:0061630 F ubiquitin protein ligase activity
GO:0070979 P protein K11-linked ubiquitination
FPKM:10.54 TPM:8.09
4250 A_BomoASG_c15152_g1_i1
1321bp
 zinc_finger_protein_NANOS-O_isoform_X1_[Bombyx_mori]
GO:0000932 C P-body
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006417 P regulation of translation
GO:0007275 P multicellular organism development
GO:0007281 P germ cell development
GO:0007283 P spermatogenesis
GO:0008270 F zinc ion binding
GO:0010494 C cytoplasmic stress granule
GO:0017148 P negative regulation of translation
GO:0030154 P cell differentiation
GO:0046872 F metal ion binding
GO:0048471 C perinuclear region of cytoplasm
GO:0048477 P oogenesis
GO:0051726 P regulation of cell cycle
GO:1900153 P positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:2001234 P negative regulation of apoptotic signaling pathway
FPKM:34.30 TPM:26.31
4251 A_BomoASG_c15153_g1_i1
269bp
FPKM:6.59 TPM:5.06
4252 A_BomoASG_c15154_g1_i1
1168bp
 olfactory_receptor_[Bombyx_mori]
FPKM:139.23 TPM:106.79
4253 A_BomoASG_c15155_g1_i1
325bp
 enoyl-[acyl-carrier-protein]_reductase,_mitochondrial_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0005829 C cytosol
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006633 P fatty acid biosynthetic process
GO:0008270 F zinc ion binding
GO:0016491 F oxidoreductase activity
GO:0016922 F nuclear receptor binding
GO:0019166 F trans-2-enoyl-CoA reductase (NADPH) activity
GO:0055114 P obsolete oxidation-reduction process
FPKM:1.72 TPM:1.32
4254 A_BomoASG_c15155_g1_i2
296bp
 enoyl-[acyl-carrier-protein]_reductase,_mitochondrial_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0005829 C cytosol
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006633 P fatty acid biosynthetic process
GO:0008270 F zinc ion binding
GO:0016491 F oxidoreductase activity
GO:0016922 F nuclear receptor binding
GO:0019166 F trans-2-enoyl-CoA reductase (NADPH) activity
GO:0055114 P obsolete oxidation-reduction process
FPKM:0.00 TPM:0.00
4255 A_BomoASG_c15156_g1_i1
729bp
 PREDICTED:_histone_H4-like_[Chrysochloris_asiatica]
GO:0000786 C nucleosome
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006334 P nucleosome assembly
GO:0006352 P DNA-templated transcription, initiation
GO:0046982 F protein heterodimerization activity
FPKM:27.65 TPM:21.21
4256 A_BomoASG_c15157_g1_i1
246bp
 enhancer_of_polycomb_homolog_1,_partial_[Bombyx_mori]
FPKM:1.56 TPM:1.20
4257 A_BomoASG_c15157_g1_i2
324bp
 enhancer_of_polycomb_homolog_1,_partial_[Bombyx_mori]
FPKM:1.56 TPM:1.20
4258 A_BomoASG_c15158_g1_i1
276bp
FPKM:0.74 TPM:0.57
4259 A_BomoASG_c15158_g1_i2
253bp
FPKM:3.19 TPM:2.45
4260 A_BomoASG_c15159_g1_i1
752bp
FPKM:40.95 TPM:31.41
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