SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/58621
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
3871 A_BomoASG_c14757_g1_i1
375bp
FPKM:2.93 TPM:2.25
3872 A_BomoASG_c14758_g1_i1
215bp
FPKM:7.23 TPM:5.55
3873 A_BomoASG_c14759_g1_i1
794bp
FPKM:3.50 TPM:2.69
3874 A_BomoASG_c14759_g2_i1
272bp
FPKM:2.47 TPM:1.90
3875 A_BomoASG_c14760_g1_i1
289bp
FPKM:5.64 TPM:4.33
3876 A_BomoASG_c14761_g1_i1
666bp
 exportin-4_[Bombyx_mori]
GO:0005049 F nuclear export signal receptor activity
GO:0005634 C nucleus
GO:0005643 C nuclear pore
GO:0005737 C cytoplasm
GO:0006611 P protein export from nucleus
GO:0006810 P transport
GO:0008536 F small GTPase binding
GO:0015031 P protein transport
FPKM:3.80 TPM:2.92
3877 A_BomoASG_c14761_g1_i2
248bp
 exportin-4_[Bombyx_mori]
GO:0005049 F nuclear export signal receptor activity
GO:0005634 C nucleus
GO:0005643 C nuclear pore
GO:0005737 C cytoplasm
GO:0006611 P protein export from nucleus
GO:0006810 P transport
GO:0008536 F small GTPase binding
GO:0015031 P protein transport
FPKM:0.00 TPM:0.00
3878 A_BomoASG_c14763_g1_i1
721bp
FPKM:2.71 TPM:2.08
3879 A_BomoASG_c14764_g1_i1
694bp
FPKM:6.88 TPM:5.28
3880 A_BomoASG_c14765_g1_i1
2011bp
 something_about_silencing_protein_10_[Bombyx_mori]
GO:0000462 P maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0007275 P multicellular organism development
GO:0007420 P brain development
GO:0016568 P chromatin organization
GO:0032040 C small-subunit processome
GO:0044822 F RNA binding
FPKM:30.59 TPM:23.46
3881 A_BomoASG_c14766_g1_i1
649bp
 probable_ubiquitin_carboxyl-terminal_hydrolase_creB_[Bombyx_mori]
GO:0001501 P skeletal system development
GO:0004843 F thiol-dependent deubiquitinase
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006282 P regulation of DNA repair
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006974 P cellular response to DNA damage stimulus
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0009411 P response to UV
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0035520 P monoubiquitinated protein deubiquitination
GO:0036459 F thiol-dependent deubiquitinase
FPKM:3.10 TPM:2.38
3882 A_BomoASG_c14767_g1_i1
225bp
FPKM:1.59 TPM:1.22
3883 A_BomoASG_c14768_g1_i1
470bp
FPKM:4.66 TPM:3.58
3884 A_BomoASG_c14769_g1_i1
229bp
 Pol_protein_[Bombyx_mori]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:4.53 TPM:3.48
3885 A_BomoASG_c14771_g1_i1
554bp
 uncharacterized_protein_LOC110385214_[Bombyx_mori]
FPKM:2.36 TPM:1.81
3886 A_BomoASG_c14773_g1_i1
494bp
FPKM:2.95 TPM:2.26
3887 A_BomoASG_c14774_g1_i1
212bp
FPKM:4.72 TPM:3.62
3888 A_BomoASG_c14775_g1_i1
242bp
 RIB43A-like_with_coiled-coils_protein_2_[Bombyx_mori]
FPKM:1.96 TPM:1.50
3889 A_BomoASG_c14776_g1_i1
427bp
FPKM:7.56 TPM:5.80
3890 A_BomoASG_c14777_g1_i1
2432bp
 DNA_damage-binding_protein_1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0016567 P protein ubiquitination
GO:0031464 C Cul4A-RING E3 ubiquitin ligase complex
GO:0031465 C Cul4B-RING E3 ubiquitin ligase complex
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0080008 C Cul4-RING E3 ubiquitin ligase complex
FPKM:29.57 TPM:22.68
3891 A_BomoASG_c14778_g1_i1
267bp
FPKM:4.13 TPM:3.16
3892 A_BomoASG_c14779_g1_i1
410bp
FPKM:2.39 TPM:1.84
3893 A_BomoASG_c14779_g1_i2
341bp
FPKM:0.00 TPM:0.00
3894 A_BomoASG_c14779_g1_i3
409bp
FPKM:0.60 TPM:0.46
3895 A_BomoASG_c14780_g1_i1
247bp
FPKM:4.96 TPM:3.81
3896 A_BomoASG_c14781_g1_i1
1365bp
FPKM:43.06 TPM:33.03
3897 A_BomoASG_c14782_g1_i1
1245bp
FPKM:2.16 TPM:1.66
3898 A_BomoASG_c14783_g1_i1
427bp
 PREDICTED:_piggyBac_transposable_element-derived_protein_4-like_[Papilio_xuthus]
FPKM:1.94 TPM:1.49
3899 A_BomoASG_c14784_g1_i1
232bp
FPKM:1.46 TPM:1.12
3900 A_BomoASG_c14785_g1_i1
441bp
 ubiquitin_carboxyl-terminal_hydrolase_32_isoform_X1_[Bombyx_mori]
GO:0004843 F thiol-dependent deubiquitinase
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0016020 C membrane
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0036459 F thiol-dependent deubiquitinase
GO:0046872 F metal ion binding
FPKM:4.93 TPM:3.78
previous next from show/58621

- SilkBase 1999-2023 -