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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
3841 A_BomoASG_c14729_g1_i2
342bp
FPKM:2.50 TPM:1.92
3842 A_BomoASG_c1472_g1_i1
420bp
 NK-tumor_recognition_protein_[Bombyx_mori]
FPKM:0.66 TPM:0.51
3843 A_BomoASG_c14731_g1_i1
1035bp
 beta-parvin_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0007155 P cell adhesion
GO:0016020 C membrane
GO:0030017 C sarcomere
GO:0030018 C Z disc
GO:0030027 C lamellipodium
GO:0030031 P cell projection assembly
GO:0030032 P lamellipodium assembly
GO:0030054 C cell junction
GO:0031532 P actin cytoskeleton reorganization
GO:0042995 C cell projection
GO:0071963 P establishment or maintenance of cell polarity regulating cell shape
FPKM:0.00 TPM:0.00
3844 A_BomoASG_c14731_g1_i2
1504bp
 beta-parvin_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0007155 P cell adhesion
GO:0016020 C membrane
GO:0030017 C sarcomere
GO:0030018 C Z disc
GO:0030027 C lamellipodium
GO:0030031 P cell projection assembly
GO:0030032 P lamellipodium assembly
GO:0030054 C cell junction
GO:0031532 P actin cytoskeleton reorganization
GO:0042995 C cell projection
GO:0071963 P establishment or maintenance of cell polarity regulating cell shape
FPKM:80.08 TPM:61.43
3845 A_BomoASG_c14732_g1_i1
1772bp
 BRISC_complex_subunit_FAM175B_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006281 P DNA repair
GO:0006302 P double-strand break repair
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006974 P cellular response to DNA damage stimulus
GO:0010212 P response to ionizing radiation
GO:0016568 P chromatin organization
GO:0031572 P mitotic G2 DNA damage checkpoint signaling
GO:0031593 F polyubiquitin modification-dependent protein binding
GO:0045739 P positive regulation of DNA repair
GO:0070531 C BRCA1-A complex
FPKM:21.20 TPM:16.26
3846 A_BomoASG_c14734_g1_i1
546bp
FPKM:5.87 TPM:4.50
3847 A_BomoASG_c14735_g1_i1
237bp
FPKM:3.45 TPM:2.64
3848 A_BomoASG_c14736_g1_i1
1469bp
 cyclin-Y-like_protein_1_[Bombyx_mori]
GO:0000079 P regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0005575 C cellular_component
GO:0019901 F protein kinase binding
FPKM:35.21 TPM:27.01
3849 A_BomoASG_c14737_g1_i1
299bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:2.43 TPM:1.86
3850 A_BomoASG_c14739_g1_i1
662bp
FPKM:7.55 TPM:5.79
3851 A_BomoASG_c14740_g1_i1
653bp
 piezo-type_mechanosensitive_ion_channel_component,_partial_[Bombyx_mori]
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0007638 P mechanosensory behavior
GO:0008381 F mechanosensitive ion channel activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0034220 P ion transmembrane transport
GO:0050896 P response to stimulus
GO:0071260 P cellular response to mechanical stimulus
FPKM:0.48 TPM:0.37
3852 A_BomoASG_c14740_g1_i2
648bp
 piezo-type_mechanosensitive_ion_channel_component,_partial_[Bombyx_mori]
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0007638 P mechanosensory behavior
GO:0008381 F mechanosensitive ion channel activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0034220 P ion transmembrane transport
GO:0050896 P response to stimulus
GO:0071260 P cellular response to mechanical stimulus
FPKM:4.05 TPM:3.11
3853 A_BomoASG_c14741_g1_i1
2083bp
 meiotic_recombination_11_[Bombyx_mori]
GO:0000014 F single-stranded DNA endodeoxyribonuclease activity
GO:0000781 C chromosome, telomeric region
GO:0000784 C chromosome, telomeric region
GO:0000790 C chromatin
GO:0000794 C condensed nuclear chromosome
GO:0003677 F DNA binding
GO:0004003 F DNA helicase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004520 F endodeoxyribonuclease activity
GO:0004527 F exonuclease activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006281 P DNA repair
GO:0006302 P double-strand break repair
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006974 P cellular response to DNA damage stimulus
GO:0007062 P sister chromatid cohesion
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0007129 P homologous chromosome pairing at meiosis
GO:0007507 P heart development
GO:0008022 F protein C-terminus binding
GO:0008283 P cell population proliferation
GO:0008408 F 3'-5' exonuclease activity
GO:0016605 C PML body
GO:0016787 F hydrolase activity
GO:0030145 F manganese ion binding
GO:0030870 C Mre11 complex
GO:0031573 P mitotic intra-S DNA damage checkpoint signaling
GO:0031860 P telomeric 3' overhang formation
GO:0031954 P positive regulation of protein autophosphorylation
GO:0032206 P positive regulation of telomere maintenance
GO:0032508 P DNA duplex unwinding
GO:0032876 P negative regulation of DNA endoreduplication
GO:0033674 P positive regulation of kinase activity
GO:0035861 C site of double-strand break
GO:0043066 P negative regulation of apoptotic process
GO:0046597 P negative regulation of viral entry into host cell
GO:0048471 C perinuclear region of cytoplasm
GO:0051276 P chromosome organization
GO:0051321 P meiotic cell cycle
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:37.75 TPM:28.95
3854 A_BomoASG_c14742_g1_i1
438bp
 uncharacterized_protein_LOC101737350_[Bombyx_mori]
FPKM:1.87 TPM:1.43
3855 A_BomoASG_c14743_g1_i1
463bp
FPKM:5.34 TPM:4.10
3856 A_BomoASG_c14744_g1_i1
345bp
FPKM:2.47 TPM:1.89
3857 A_BomoASG_c14745_g1_i1
343bp
FPKM:8.41 TPM:6.45
3858 A_BomoASG_c14746_g1_i1
294bp
FPKM:2.51 TPM:1.93
3859 A_BomoASG_c14747_g1_i1
215bp
FPKM:7.23 TPM:5.55
3860 A_BomoASG_c14748_g1_i1
251bp
FPKM:2.39 TPM:1.83
3861 A_BomoASG_c14748_g2_i1
352bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:1.49 TPM:1.14
3862 A_BomoASG_c14749_g1_i1
1721bp
 inactive_hydroxysteroid_dehydrogenase-like_protein_1_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0008152 P metabolic process
GO:0016491 F oxidoreductase activity
GO:0055114 P obsolete oxidation-reduction process
FPKM:25.32 TPM:19.42
3863 A_BomoASG_c14750_g1_i1
671bp
 microtubule-associated_serine/threonine-protein_kinase_3_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000287 F magnesium ion binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0006468 P protein phosphorylation
GO:0007010 P cytoskeleton organization
GO:0008017 F microtubule binding
GO:0015630 C microtubule cytoskeleton
GO:0016020 C membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0018105 P peptidyl-serine phosphorylation
GO:0019902 F phosphatase binding
GO:0035556 P intracellular signal transduction
GO:0045075 P regulation of interleukin-12 production
GO:0046872 F metal ion binding
GO:0048515 P spermatid differentiation
FPKM:3.20 TPM:2.45
3864 A_BomoASG_c14751_g1_i1
270bp
FPKM:2.01 TPM:1.54
3865 A_BomoASG_c14752_g1_i1
341bp
FPKM:2.20 TPM:1.69
3866 A_BomoASG_c14753_g1_i1
287bp
FPKM:3.08 TPM:2.36
3867 A_BomoASG_c14754_g1_i1
214bp
FPKM:3.18 TPM:2.44
3868 A_BomoASG_c14754_g1_i2
359bp
FPKM:6.47 TPM:4.97
3869 A_BomoASG_c14755_g1_i1
3069bp
 LOW_QUALITY_PROTEIN:_peroxisomal_membrane_protein_PEX14_[Bombyx_mori]
FPKM:189.40 TPM:145.28
3870 A_BomoASG_c14756_g1_i1
285bp
FPKM:2.23 TPM:1.71
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