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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
2761 A_BomoASG_c13540_g1_i1
727bp
 NTF2-like_export_factor_1_[Bombyx_mori]
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006406 P mRNA export from nucleus
GO:0006408 P snRNA export from nucleus
GO:0006409 P tRNA export from nucleus
GO:0006611 P protein export from nucleus
GO:0006810 P transport
GO:0009267 P cellular response to starvation
GO:0015031 P protein transport
GO:0016973 P poly(A)+ mRNA export from nucleus
GO:0045824 P negative regulation of innate immune response
GO:0050829 P defense response to Gram-negative bacterium
GO:0051028 P mRNA transport
FPKM:34.09 TPM:26.15
2762 A_BomoASG_c13541_g1_i1
225bp
FPKM:2.38 TPM:1.83
2763 A_BomoASG_c13544_g1_i1
363bp
FPKM:2.82 TPM:2.16
2764 A_BomoASG_c13545_g1_i1
672bp
FPKM:3.53 TPM:2.71
2765 A_BomoASG_c13546_g1_i1
253bp
FPKM:1.75 TPM:1.35
2766 A_BomoASG_c13547_g1_i1
203bp
FPKM:14.05 TPM:10.78
2767 A_BomoASG_c13549_g1_i1
245bp
FPKM:5.06 TPM:3.88
2768 A_BomoASG_c1354_g1_i1
299bp
 uncharacterized_protein_LOC101746938_[Bombyx_mori]
FPKM:2.43 TPM:1.86
2769 A_BomoASG_c13550_g1_i1
238bp
FPKM:0.00 TPM:0.00
2770 A_BomoASG_c13551_g1_i1
522bp
FPKM:5.29 TPM:4.06
2771 A_BomoASG_c13553_g1_i1
500bp
FPKM:2.39 TPM:1.83
2772 A_BomoASG_c13556_g1_i1
462bp
 ribosomal_protein_S25_[Bombyx_mori]
GO:0005840 C ribosome
GO:0030529 C ribonucleoprotein complex
FPKM:2035.13 TPM:1561.03
2773 A_BomoASG_c13558_g1_i1
312bp
FPKM:1.86 TPM:1.43
2774 A_BomoASG_c13559_g1_i1
209bp
FPKM:1.97 TPM:1.51
2775 A_BomoASG_c13560_g1_i1
288bp
 PREDICTED:_uncharacterized_protein_LOC108975947_[Bactrocera_latifrons]
FPKM:1.31 TPM:1.01
2776 A_BomoASG_c13561_g1_i1
263bp
FPKM:8.54 TPM:6.55
2777 A_BomoASG_c13562_g1_i1
398bp
 hypothetical_protein_RR46_13850_[Papilio_xuthus]
FPKM:2.41 TPM:1.85
2778 A_BomoASG_c13563_g1_i1
405bp
FPKM:2.58 TPM:1.98
2779 A_BomoASG_c13564_g1_i1
1442bp
 interleukin_enhancer_binding_factor_isoform_X1_[Bombyx_mori]
GO:0000398 P mRNA splicing, via spliceosome
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003725 F double-stranded RNA binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006955 P immune response
GO:0016740 F transferase activity
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
FPKM:33.22 TPM:25.48
2780 A_BomoASG_c13565_g1_i1
460bp
FPKM:2.89 TPM:2.22
2781 A_BomoASG_c1356_g1_i1
289bp
FPKM:1.30 TPM:1.00
2782 A_BomoASG_c13570_g1_i1
613bp
 putative_nuclease_HARBI1_[Bombyx_mori]
FPKM:1.54 TPM:1.18
2783 A_BomoASG_c13571_g1_i1
326bp
FPKM:1.71 TPM:1.31
2784 A_BomoASG_c13572_g1_i1
898bp
 uncharacterized_protein_LOC101746966_isoform_X2_[Bombyx_mori]
FPKM:2.22 TPM:1.70
2785 A_BomoASG_c13573_g1_i1
510bp
 zinc_finger_protein_93-like_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007399 P nervous system development
GO:0030154 P cell differentiation
GO:0045666 P positive regulation of neuron differentiation
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0070888 F E-box binding
FPKM:1.66 TPM:1.27
2786 A_BomoASG_c13575_g1_i1
1537bp
 HSP90_cochaperone_CDC37_homologue_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0019901 F protein kinase binding
FPKM:42.48 TPM:32.58
2787 A_BomoASG_c13576_g1_i1
316bp
FPKM:4.35 TPM:3.34
2788 A_BomoASG_c13577_g1_i1
466bp
 uncharacterized_protein_LOC101738019_[Bombyx_mori]
FPKM:2.27 TPM:1.74
2789 A_BomoASG_c13579_g1_i1
308bp
FPKM:1.91 TPM:1.46
2790 A_BomoASG_c13580_g1_i1
633bp
 LOW_QUALITY_PROTEIN:_transcription_and_mRNA_export_factor_ENY2_[Bombyx_mori]
GO:0000124 C SAGA complex
GO:0003713 F transcription coactivator activity
GO:0005634 C nucleus
GO:0005643 C nuclear pore
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006368 P transcription elongation from RNA polymerase II promoter
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0015031 P protein transport
GO:0016568 P chromatin organization
GO:0016578 P histone deubiquitination
GO:0030374 F nuclear receptor coactivator activity
GO:0043035 F chromatin insulator sequence binding
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0051028 P mRNA transport
GO:0070390 C transcription export complex 2
GO:0071819 C DUBm complex
FPKM:35.96 TPM:27.59
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