SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/52479
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
61 A_SariMG_comp101782_c0_seq1
1005bp
PREDICTED:_adenylate_kinase_isoenzyme_1_isoform_X2_[Papilio_machaon]
GO:0000166 F nucleotide binding
GO:0001520 C outer dense fiber
GO:0004017 F adenylate kinase activity
GO:0004550 F nucleoside diphosphate kinase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006139 P nucleobase-containing compound metabolic process
GO:0006165 P nucleoside diphosphate phosphorylation
GO:0006172 P ADP biosynthetic process
GO:0007050 P regulation of cell cycle
GO:0009142 P nucleoside triphosphate biosynthetic process
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0019205 F nucleobase-containing compound kinase activity
GO:0036126 C sperm flagellum
GO:0046033 P AMP metabolic process
GO:0046034 P ATP metabolic process
GO:0070062 C extracellular exosome
FPKM:3.39 TPM:3.40
62 A_SariMG_comp101795_c0_seq1
440bp
FPKM:4.49 TPM:4.51
63 A_SariMG_comp101821_c0_seq1
1211bp
PREDICTED:_rRNA_methyltransferase_2,_mitochondrial_[Papilio_polytes]
GO:0000453 P enzyme-directed rRNA 2'-O-methylation
GO:0001510 P RNA methylation
GO:0005739 C mitochondrion
GO:0006364 P rRNA processing
GO:0008168 F methyltransferase activity
GO:0008650 F rRNA (uridine-2'-O-)-methyltransferase activity
GO:0016740 F transferase activity
GO:0032259 P methylation
FPKM:3.92 TPM:3.93
64 A_SariMG_comp101828_c0_seq1
1643bp
hypothetical_protein_KGM_05784_[Danaus_plexippus]
GO:0004526 F ribonuclease P activity
GO:0005739 C mitochondrion
GO:0008033 P tRNA processing
GO:0042645 C mitochondrial nucleoid
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
FPKM:3.38 TPM:3.39
65 A_SariMG_comp101841_c0_seq1
795bp
hypothetical_protein_BACCAC_03349_[Bacteroides_caccae_ATCC_43185]
FPKM:3.06 TPM:3.07
66 A_SariMG_comp101868_c0_seq1
1647bp
FPKM:3.46 TPM:3.47
67 A_SariMG_comp101885_c0_seq1
1429bp
hypothetical_protein_KGM_16798_[Danaus_plexippus]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006810 P transport
GO:0015031 P protein transport
GO:0031144 P proteasome localization
GO:0071630 P nuclear protein quality control by the ubiquitin-proteasome system
FPKM:2.71 TPM:2.71
68 A_SariMG_comp10189_c0_seq1
227bp
Vga_family_ABC-F_type_ribosomal_protection_protein_[Thermoactinomycetaceae_bacterium_GD1]
FPKM:0.85 TPM:0.86
69 A_SariMG_comp10196_c0_seq1
208bp
FPKM:0.00 TPM:0.00
70 A_SariMG_comp1022823_c0_seq1
226bp
FPKM:0.58 TPM:0.58
71 A_SariMG_comp102381_c0_seq1
698bp
FPKM:4.07 TPM:4.09
72 A_SariMG_comp10247_c0_seq1
225bp
FPKM:0.87 TPM:0.88
73 A_SariMG_comp102531_c0_seq1
312bp
FPKM:2.00 TPM:2.01
74 A_SariMG_comp1025595_c0_seq1
225bp
FPKM:0.87 TPM:0.88
75 A_SariMG_comp102614_c0_seq1
990bp
hypothetical_protein_RR46_14329_[Papilio_xuthus]
FPKM:2.38 TPM:2.39
76 A_SariMG_comp10262_c0_seq1
211bp
FPKM:1.39 TPM:1.40
77 A_SariMG_comp102687_c0_seq1
1304bp
FPKM:3.04 TPM:3.05
78 A_SariMG_comp1027365_c0_seq1
204bp
hypothetical_protein_Htur_1299_[Haloterrigena_turkmenica_DSM_5511]
FPKM:0.77 TPM:0.77
79 A_SariMG_comp102738_c0_seq1
1000bp
PREDICTED:_regulator_of_G-protein_signaling_17_[Amyelois_transitella]
GO:0005096 F GTPase activator activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005802 C trans-Golgi network
GO:0005881 C cytoplasmic microtubule
GO:0005886 C plasma membrane
GO:0005938 C cell cortex
GO:0006355 P regulation of transcription, DNA-templated
GO:0008013 F beta-catenin binding
GO:0008219 P cell death
GO:0009950 P dorsal/ventral axis specification
GO:0009968 P negative regulation of signal transduction
GO:0014069 C postsynaptic density
GO:0016020 C membrane
GO:0016023 C cytoplasmic vesicle
GO:0019901 F protein kinase binding
GO:0030154 P cell differentiation
GO:0030877 C beta-catenin destruction complex
GO:0035412 P regulation of canonical Wnt signaling pathway
GO:0043547 P positive regulation of GTPase activity
GO:0070016 F armadillo repeat domain binding
GO:0071407 P cellular response to organic cyclic compound
GO:0090090 P negative regulation of canonical Wnt signaling pathway
GO:0090244 P Wnt signaling pathway involved in somitogenesis
FPKM:3.29 TPM:3.30
80 A_SariMG_comp102756_c0_seq1
329bp
FPKM:4.30 TPM:4.31
81 A_SariMG_comp102778_c0_seq1
254bp
endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:1.74 TPM:1.74
82 A_SariMG_comp102829_c0_seq1
748bp
FPKM:2.53 TPM:2.54
83 A_SariMG_comp102841_c0_seq1
1785bp
PREDICTED:_KRAB-A_domain-containing_protein_2-like_[Papilio_polytes]
GO:0003676 F nucleic acid binding
GO:0005622 C intracellular anatomical structure
GO:0006355 P regulation of transcription, DNA-templated
GO:0015074 P DNA integration
FPKM:3.28 TPM:3.29
84 A_SariMG_comp102889_c0_seq1
601bp
FPKM:1.70 TPM:1.70
85 A_SariMG_comp1029306_c0_seq1
256bp
predicted_protein_[Micromonas_pusilla_CCMP1545]
FPKM:0.64 TPM:0.64
86 A_SariMG_comp1029486_c0_seq1
226bp
FPKM:0.86 TPM:0.87
87 A_SariMG_comp103018_c0_seq1
409bp
FPKM:1.82 TPM:1.83
88 A_SariMG_comp1030417_c0_seq1
242bp
FPKM:0.49 TPM:0.49
89 A_SariMG_comp103057_c0_seq1
1765bp
FPKM:3.26 TPM:3.27
90 A_SariMG_comp103075_c0_seq1
510bp
FPKM:5.10 TPM:5.11
previous next from show/52479

- SilkBase 1999-2023 -