SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/52479
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
271 A_SariMG_comp108563_c0_seq1
1187bp
PREDICTED:_histone_chaperone_asf1_[Amyelois_transitella]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0001103 F RNA polymerase II-specific DNA-binding transcription factor binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005700 C polytene chromosome
GO:0006325 P chromatin organization
GO:0006333 P chromatin assembly or disassembly
GO:0006334 P nucleosome assembly
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007517 P muscle organ development
GO:0016568 P chromatin organization
GO:0017053 C transcription repressor complex
GO:0033186 C CAF-1 complex
GO:0035059 C RCAF complex
GO:0045746 P negative regulation of Notch signaling pathway
GO:0048024 P regulation of mRNA splicing, via spliceosome
GO:0048813 P dendrite morphogenesis
FPKM:3.73 TPM:3.74
272 A_SariMG_comp108586_c0_seq1
1216bp
PREDICTED:_leucine-rich_repeat-containing_protein_57_[Amyelois_transitella]
FPKM:3.45 TPM:3.46
273 A_SariMG_comp108610_c0_seq1
452bp
FPKM:1.96 TPM:1.97
274 A_SariMG_comp108731_c0_seq1
1084bp
PREDICTED:_INO80_complex_subunit_B,_partial_[Papilio_machaon]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
GO:0031011 C Ino80 complex
GO:0046872 F metal ion binding
FPKM:4.53 TPM:4.54
275 A_SariMG_comp108739_c0_seq1
237bp
PREDICTED:_protein_FAM200A-like_[Papilio_xuthus]
FPKM:0.00 TPM:0.00
276 A_SariMG_comp108836_c0_seq1
416bp
FPKM:2.96 TPM:2.97
277 A_SariMG_comp10885_c0_seq1
274bp
FPKM:0.74 TPM:0.74
278 A_SariMG_comp108916_c0_seq1
229bp
FPKM:6.96 TPM:6.98
279 A_SariMG_comp108918_c0_seq1
818bp
FPKM:2.56 TPM:2.57
280 A_SariMG_comp108949_c0_seq1
596bp
FPKM:3.22 TPM:3.23
281 A_SariMG_comp108957_c0_seq1
691bp
hypothetical_protein_[Selenomonas_bovis]
FPKM:2.88 TPM:2.89
282 A_SariMG_comp109010_c0_seq1
640bp
FPKM:3.13 TPM:3.14
283 A_SariMG_comp109057_c0_seq1
515bp
FPKM:3.40 TPM:3.41
284 A_SariMG_comp109244_c0_seq1
337bp
FPKM:0.37 TPM:0.38
285 A_SariMG_comp109246_c0_seq1
1064bp
Replication_factor_C_38kD_subunit_[Operophtera_brumata]
GO:0003677 F DNA binding
GO:0003689 F DNA clamp loader activity
GO:0005634 C nucleus
GO:0005663 C DNA replication factor C complex
GO:0006260 P DNA replication
GO:0006261 P DNA-dependent DNA replication
GO:0016887 F ATP hydrolysis activity
GO:0031390 C Ctf18 RFC-like complex
GO:0043142 F single-stranded DNA helicase activity
GO:0046683 P response to organophosphorus
GO:1900264 P positive regulation of DNA-directed DNA polymerase activity
FPKM:3.72 TPM:3.74
286 A_SariMG_comp109275_c0_seq1
1869bp
methoprene_tolerant_protein_1_[Helicoverpa_armigera]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0003053 P circadian regulation of heart rate
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005667 C transcription regulator complex
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007622 P rhythmic behavior
GO:0007623 P circadian rhythm
GO:0008062 P eclosion rhythm
GO:0008134 F transcription factor binding
GO:0009266 P response to temperature stimulus
GO:0009649 P entrainment of circadian clock
GO:0032922 P circadian regulation of gene expression
GO:0043066 P negative regulation of apoptotic process
GO:0045187 P regulation of circadian sleep/wake cycle, sleep
GO:0045475 P locomotor rhythm
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046982 F protein heterodimerization activity
GO:0046983 F protein dimerization activity
GO:0048148 P behavioral response to cocaine
GO:0048511 P rhythmic process
FPKM:3.24 TPM:3.25
287 A_SariMG_comp109340_c0_seq1
902bp
FPKM:2.66 TPM:2.67
288 A_SariMG_comp109346_c0_seq1
483bp
FPKM:3.50 TPM:3.51
289 A_SariMG_comp10936_c0_seq1
230bp
FPKM:1.10 TPM:1.10
290 A_SariMG_comp109371_c0_seq1
651bp
PREDICTED:_MIP18_family_protein_CG7949_[Amyelois_transitella]
GO:0003674 F molecular_function
GO:0005515 F protein binding
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0007059 P chromosome segregation
GO:0008150 P biological_process
GO:0016226 P iron-sulfur cluster assembly
FPKM:3.83 TPM:3.84
291 A_SariMG_comp109396_c0_seq1
388bp
Deoxycytidyl_transferase,_forms_a_complex_with_the_subunits_of_DNA_polymerase_zeta,_Rev3p_and_Rev7p_[Komagataella_phaffii_GS115]
FPKM:2.77 TPM:2.78
292 A_SariMG_comp109463_c0_seq1
317bp
Carboxylesterase_ae27_[Operophtera_brumata]
FPKM:5.29 TPM:5.30
293 A_SariMG_comp1094736_c0_seq1
231bp
Protein_kinase_C_alpha_binding_protein,_partial_[Operophtera_brumata]
GO:0001664 F G protein-coupled receptor binding
GO:0002092 P positive regulation of receptor internalization
GO:0003779 F actin binding
GO:0005080 F protein kinase C binding
GO:0005102 F signaling receptor binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0006468 P protein phosphorylation
GO:0007205 P protein kinase C-activating G protein-coupled receptor signaling pathway
GO:0008022 F protein C-terminus binding
GO:0010629 P negative regulation of gene expression
GO:0014069 C postsynaptic density
GO:0015844 P monoamine transport
GO:0015872 P dopamine transport
GO:0016020 C membrane
GO:0016887 F ATP hydrolysis activity
GO:0019904 F protein domain specific binding
GO:0021782 P glial cell development
GO:0030054 C cell junction
GO:0030425 C dendrite
GO:0030971 F receptor tyrosine kinase binding
GO:0034316 P negative regulation of Arp2/3 complex-mediated actin nucleation
GO:0035256 F G protein-coupled glutamate receptor binding
GO:0036294 P cellular response to decreased oxygen levels
GO:0042149 P cellular response to glucose starvation
GO:0042734 C presynaptic membrane
GO:0042802 F identical protein binding
GO:0043005 C neuron projection
GO:0043113 P receptor clustering
GO:0043234 C protein-containing complex
GO:0045202 C synapse
GO:0045211 C postsynaptic membrane
GO:0046872 F metal ion binding
GO:0046875 F ephrin receptor binding
GO:0048471 C perinuclear region of cytoplasm
GO:0051015 F actin filament binding
GO:0051020 F GTPase binding
GO:0060292 P long-term synaptic depression
GO:0060548 P negative regulation of cell death
GO:0071933 F Arp2/3 complex binding
GO:0097061 P dendritic spine organization
GO:0097062 P dendritic spine maintenance
FPKM:0.82 TPM:0.82
294 A_SariMG_comp109556_c0_seq1
668bp
tRNA_(guanine-N(7)-)-methyltransferase_[Atopobium_sp._oral_taxon_810]
FPKM:2.73 TPM:2.74
295 A_SariMG_comp109576_c0_seq1
1323bp
PREDICTED:_RNA-binding_protein_40-like_[Papilio_polytes]
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005689 C U12-type spliceosomal complex
GO:0030626 F U12 snRNA binding
GO:0032502 P developmental process
GO:0097157 F pre-mRNA intronic binding
FPKM:2.99 TPM:3.00
296 A_SariMG_comp109579_c0_seq1
344bp
FPKM:6.51 TPM:6.53
297 A_SariMG_comp109587_c0_seq1
483bp
hypothetical_protein_[Streptomyces_sp._NRRL_WC-3626]
FPKM:3.43 TPM:3.44
298 A_SariMG_comp109623_c0_seq1
829bp
FPKM:2.80 TPM:2.81
299 A_SariMG_comp109629_c0_seq1
282bp
FPKM:5.56 TPM:5.58
300 A_SariMG_comp109633_c0_seq1
494bp
FPKM:3.87 TPM:3.89
previous next from show/52479

- SilkBase 1999-2023 -