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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
931 A_BomoN4EE_TR100542_c0_g2_i1
1069bp
 TATA_element_modulatory_factor_[Papilio_xuthus]
GO:0000139 C Golgi membrane
GO:0001675 P acrosome assembly
GO:0001819 P positive regulation of cytokine production
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007286 P spermatid development
GO:0007289 P spermatid nucleus differentiation
GO:0008584 P male gonad development
GO:0010629 P negative regulation of gene expression
GO:0016020 C membrane
GO:0030317 P flagellated sperm motility
GO:0032275 P luteinizing hormone secretion
GO:0033327 P Leydig cell differentiation
GO:0042742 P defense response to bacterium
GO:0043066 P negative regulation of apoptotic process
GO:0061136 P regulation of proteasomal protein catabolic process
GO:0071407 P cellular response to organic cyclic compound
GO:2000845 P positive regulation of testosterone secretion
FPKM:5.57 TPM:7.42
932 A_BomoN4EE_TR100543_c0_g1_i1
235bp
FPKM:0.54 TPM:0.72
933 A_BomoN4EE_TR100543_c0_g2_i1
553bp
FPKM:2.41 TPM:3.22
934 A_BomoN4EE_TR100544_c0_g1_i1
397bp
 membrane_protein_[Nereida_ignava]
FPKM:0.71 TPM:0.94
935 A_BomoN4EE_TR100544_c1_g1_i1
359bp
 putative_RNA-directed_DNA_polymerase_from_transposon_BS_[Papilio_xuthus]
FPKM:0.17 TPM:0.23
936 A_BomoN4EE_TR100544_c3_g1_i1
375bp
 putative_RNA-directed_DNA_polymerase_from_transposon_BS_[Papilio_machaon]
FPKM:0.32 TPM:0.42
937 A_BomoN4EE_TR100545_c0_g1_i1
4344bp
 Cullin-5_[Papilio_machaon]
GO:0005515 F protein binding
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0016567 P protein ubiquitination
GO:0021799 P cerebral cortex radially oriented cell migration
GO:0021942 P radial glia guided migration of Purkinje cell
GO:0031461 C cullin-RING ubiquitin ligase complex
GO:0031466 C Cul5-RING ubiquitin ligase complex
GO:0031625 F ubiquitin protein ligase binding
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0046982 F protein heterodimerization activity
GO:0061630 F ubiquitin protein ligase activity
FPKM:3.02 TPM:4.02
938 A_BomoN4EE_TR100545_c0_g2_i1
2784bp
 PREDICTED:_cullin-5_[Papilio_machaon]
GO:0000082 P G1/S transition of mitotic cell cycle
GO:0004842 F ubiquitin-protein transferase activity
GO:0004872 F signaling receptor activity
GO:0005262 F calcium channel activity
GO:0005515 F protein binding
GO:0005829 C cytosol
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0007050 P regulation of cell cycle
GO:0008283 P cell population proliferation
GO:0008285 P negative regulation of cell population proliferation
GO:0016032 P viral process
GO:0016567 P protein ubiquitination
GO:0031461 C cullin-RING ubiquitin ligase complex
GO:0031466 C Cul5-RING ubiquitin ligase complex
GO:0031625 F ubiquitin protein ligase binding
GO:0038128 P ERBB2 signaling pathway
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0061630 F ubiquitin protein ligase activity
GO:0070588 P calcium ion transmembrane transport
GO:0097193 P intrinsic apoptotic signaling pathway
FPKM:27.67 TPM:36.85
939 A_BomoN4EE_TR100545_c1_g1_i1
448bp
FPKM:3.18 TPM:4.23
940 A_BomoN4EE_TR100546_c0_g1_i1
385bp
 PREDICTED:_neuroligin-2_isoform_X1_[Bombyx_mori]
FPKM:0.00 TPM:0.00
941 A_BomoN4EE_TR100546_c0_g1_i2
741bp
 chorion_class_A_[Bombyx_mori]
FPKM:1.64 TPM:2.18
942 A_BomoN4EE_TR100547_c0_g1_i1
876bp
 PREDICTED:_tubulin_beta_chain-like_isoform_X1_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005200 F structural constituent of cytoskeleton
GO:0005525 F GTP binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0007017 P microtubule-based process
GO:0007409 P axonogenesis
GO:0007411 P axon guidance
GO:0007507 P heart development
GO:0008152 P metabolic process
GO:0009416 P response to light stimulus
GO:0022008 P neurogenesis
GO:0030537 P larval behavior
GO:0045298 C tubulin complex
FPKM:159.57 TPM:212.55
943 A_BomoN4EE_TR100547_c0_g2_i1
1094bp
 tubulin_beta_chain-like_[Papilio_xuthus]
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005200 F structural constituent of cytoskeleton
GO:0005525 F GTP binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0007017 P microtubule-based process
GO:0008152 P metabolic process
FPKM:51.58 TPM:68.71
944 A_BomoN4EE_TR100548_c0_g1_i1
257bp
FPKM:1.61 TPM:2.14
945 A_BomoN4EE_TR100548_c0_g2_i1
257bp
FPKM:0.81 TPM:1.07
946 A_BomoN4EE_TR100549_c0_g1_i1
817bp
 PREDICTED:_RING-box_protein_2-like_[Bombyx_mori]
FPKM:1.39 TPM:1.86
947 A_BomoN4EE_TR100549_c0_g2_i1
555bp
 olfactory_receptor_[Bombyx_mori]
FPKM:3.44 TPM:4.58
948 A_BomoN4EE_TR10054_c0_g1_i1
668bp
 olfactory_receptor_[Bombyx_mori]
FPKM:0.18 TPM:0.24
949 A_BomoN4EE_TR100550_c0_g1_i1
1619bp
 hypothetical_protein_KGM_07467_[Danaus_plexippus]
GO:0003677 F DNA binding
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005634 C nucleus
GO:0006310 P DNA recombination
GO:0006313 P transposition, DNA-mediated
GO:0015074 P DNA integration
GO:0016787 F hydrolase activity
GO:0032502 P developmental process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:1.67 TPM:2.22
950 A_BomoN4EE_TR100551_c0_g1_i1
308bp
 PREDICTED:_uncharacterized_protein_K02A2.6-like_[Plutella_xylostella]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:0.00 TPM:0.00
951 A_BomoN4EE_TR100551_c0_g2_i1
331bp
 PREDICTED:_uncharacterized_protein_K02A2.6-like_[Plutella_xylostella]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:0.83 TPM:1.10
952 A_BomoN4EE_TR100551_c1_g1_i1
930bp
 PREDICTED:_uncharacterized_protein_LOC106131099_[Amyelois_transitella]
GO:0003676 F nucleic acid binding
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0046872 F metal ion binding
FPKM:0.75 TPM:1.00
953 A_BomoN4EE_TR100551_c1_g2_i1
965bp
 PREDICTED:_uncharacterized_protein_LOC106131099_[Amyelois_transitella]
GO:0003676 F nucleic acid binding
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0046872 F metal ion binding
FPKM:0.00 TPM:0.00
954 A_BomoN4EE_TR100551_c2_g1_i1
543bp
 PREDICTED:_uncharacterized_protein_LOC106714598_[Papilio_machaon]
GO:0003676 F nucleic acid binding
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0046872 F metal ion binding
FPKM:0.17 TPM:0.22
955 A_BomoN4EE_TR100552_c0_g1_i1
861bp
 PREDICTED:_NEDD8_ultimate_buster_1-like_[Amyelois_transitella]
FPKM:1.88 TPM:2.50
956 A_BomoN4EE_TR100552_c0_g2_i1
1049bp
 PREDICTED:_NEDD8_ultimate_buster_1-like_[Amyelois_transitella]
FPKM:0.49 TPM:0.65
957 A_BomoN4EE_TR100552_c0_g2_i2
2716bp
 PREDICTED:_NEDD8_ultimate_buster_1_isoform_X2_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0016567 P protein ubiquitination
GO:0032436 P positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0034341 P response to interferon-gamma
GO:0034612 P response to tumor necrosis factor
FPKM:4.41 TPM:5.87
958 A_BomoN4EE_TR100552_c0_g2_i3
1512bp
 PREDICTED:_NEDD8_ultimate_buster_1_isoform_X2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0016567 P protein ubiquitination
GO:0032436 P positive regulation of proteasomal ubiquitin-dependent protein catabolic process
FPKM:0.94 TPM:1.25
959 A_BomoN4EE_TR100553_c0_g1_i1
911bp
 PREDICTED:_uncharacterized_protein_LOC106710845,_partial_[Papilio_machaon]
FPKM:2.10 TPM:2.80
960 A_BomoN4EE_TR100554_c0_g1_i1
1545bp
FPKM:2.44 TPM:3.25
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