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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
661 A_BomoN4EE_TR100387_c0_g1_i1
328bp
FPKM:0.42 TPM:0.56
662 A_BomoN4EE_TR100387_c0_g2_i1
288bp
FPKM:0.00 TPM:0.00
663 A_BomoN4EE_TR100387_c1_g1_i1
313bp
FPKM:0.24 TPM:0.31
664 A_BomoN4EE_TR100388_c0_g1_i1
926bp
FPKM:0.28 TPM:0.37
665 A_BomoN4EE_TR100388_c1_g1_i1
966bp
 D-3-phosphoglycerate_dehydrogenase_[Bacillus_sp._NRRL_B-14911]
FPKM:0.38 TPM:0.50
666 A_BomoN4EE_TR100389_c0_g1_i1
467bp
FPKM:8.66 TPM:11.54
667 A_BomoN4EE_TR100389_c0_g2_i1
468bp
FPKM:1.79 TPM:2.39
668 A_BomoN4EE_TR10038_c0_g1_i1
463bp
FPKM:0.21 TPM:0.29
669 A_BomoN4EE_TR100390_c0_g1_i1
289bp
FPKM:0.58 TPM:0.77
670 A_BomoN4EE_TR100390_c0_g2_i1
290bp
FPKM:0.00 TPM:0.00
671 A_BomoN4EE_TR100391_c0_g1_i1
1912bp
 olfactory_receptor_[Bombyx_mori]
FPKM:2.19 TPM:2.92
672 A_BomoN4EE_TR100391_c0_g2_i1
1724bp
 choline_transporter_[Corynebacterium_sp._NML_130206]
FPKM:0.00 TPM:0.00
673 A_BomoN4EE_TR100392_c0_g1_i1
243bp
FPKM:1.44 TPM:1.92
674 A_BomoN4EE_TR100392_c1_g1_i1
259bp
FPKM:1.18 TPM:1.57
675 A_BomoN4EE_TR100392_c2_g1_i1
304bp
FPKM:0.51 TPM:0.67
676 A_BomoN4EE_TR100393_c1_g1_i1
625bp
 PREDICTED:_ubiquitin_conjugation_factor_E4_A_[Bombyx_mori]
FPKM:1.07 TPM:1.43
677 A_BomoN4EE_TR100394_c0_g1_i1
1618bp
FPKM:1.63 TPM:2.17
678 A_BomoN4EE_TR100395_c0_g1_i1
685bp
 PREDICTED:_protrudin_isoform_X2_[Bombyx_mori]
FPKM:1.65 TPM:2.20
679 A_BomoN4EE_TR100396_c0_g1_i1
403bp
FPKM:0.14 TPM:0.18
680 A_BomoN4EE_TR100396_c1_g1_i1
229bp
FPKM:0.00 TPM:0.00
681 A_BomoN4EE_TR100397_c0_g1_i1
1162bp
 PREDICTED:_FUN14_domain-containing_protein_1_isoform_X1_[Papilio_machaon]
GO:0000422 P autophagy of mitochondrion
GO:0001666 P response to hypoxia
GO:0005739 C mitochondrion
GO:0005741 C mitochondrial outer membrane
GO:0006914 P autophagy
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031307 C integral component of mitochondrial outer membrane
FPKM:113.94 TPM:151.77
682 A_BomoN4EE_TR100397_c0_g1_i2
1272bp
 PREDICTED:_FUN14_domain-containing_protein_1_isoform_X1_[Papilio_machaon]
GO:0000422 P autophagy of mitochondrion
GO:0001666 P response to hypoxia
GO:0005739 C mitochondrion
GO:0005741 C mitochondrial outer membrane
GO:0006914 P autophagy
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031307 C integral component of mitochondrial outer membrane
FPKM:41.28 TPM:54.98
683 A_BomoN4EE_TR100398_c0_g1_i1
1746bp
 broad_complex_isoform_7_[Helicoverpa_armigera]
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0001752 P compound eye photoreceptor fate commitment
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006355 P regulation of transcription, DNA-templated
GO:0006914 P autophagy
GO:0007275 P multicellular organism development
GO:0007458 P progression of morphogenetic furrow involved in compound eye morphogenesis
GO:0007552 P metamorphosis
GO:0007562 P eclosion
GO:0008219 P cell death
GO:0009608 P response to symbiont
GO:0010629 P negative regulation of gene expression
GO:0010906 P regulation of glucose metabolic process
GO:0030707 P ovarian follicle cell development
GO:0035070 P salivary gland histolysis
GO:0035071 P salivary gland cell autophagic cell death
GO:0035072 P ecdysone-mediated induction of salivary gland cell autophagic cell death
GO:0035075 P response to ecdysone
GO:0035193 P larval central nervous system remodeling
GO:0040034 P regulation of development, heterochronic
GO:0042332 P gravitaxis
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0048477 P oogenesis
GO:0048747 P muscle cell development
GO:0048808 P male genitalia morphogenesis
GO:0048813 P dendrite morphogenesis
GO:0071390 P cellular response to ecdysone
FPKM:0.90 TPM:1.19
684 A_BomoN4EE_TR100398_c0_g2_i1
2484bp
 broad_complex_isoform_7_[Helicoverpa_armigera]
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0001752 P compound eye photoreceptor fate commitment
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006355 P regulation of transcription, DNA-templated
GO:0006914 P autophagy
GO:0007275 P multicellular organism development
GO:0007458 P progression of morphogenetic furrow involved in compound eye morphogenesis
GO:0007552 P metamorphosis
GO:0007562 P eclosion
GO:0008219 P cell death
GO:0009608 P response to symbiont
GO:0010629 P negative regulation of gene expression
GO:0010906 P regulation of glucose metabolic process
GO:0030707 P ovarian follicle cell development
GO:0035070 P salivary gland histolysis
GO:0035071 P salivary gland cell autophagic cell death
GO:0035072 P ecdysone-mediated induction of salivary gland cell autophagic cell death
GO:0035075 P response to ecdysone
GO:0035193 P larval central nervous system remodeling
GO:0040034 P regulation of development, heterochronic
GO:0042332 P gravitaxis
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0048477 P oogenesis
GO:0048747 P muscle cell development
GO:0048808 P male genitalia morphogenesis
GO:0048813 P dendrite morphogenesis
GO:0071390 P cellular response to ecdysone
FPKM:8.67 TPM:11.55
685 A_BomoN4EE_TR100399_c0_g1_i1
623bp
FPKM:2.29 TPM:3.05
686 A_BomoN4EE_TR100399_c0_g2_i1
3462bp
 scaffold_protein_salvador_[Bombyx_mori]
GO:0001942 P hair follicle development
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0007165 P signal transduction
GO:0030216 P keratinocyte differentiation
GO:0035329 P hippo signaling
GO:0043065 P positive regulation of apoptotic process
GO:0045600 P positive regulation of fat cell differentiation
GO:0046620 P regulation of organ growth
GO:0050680 P negative regulation of epithelial cell proliferation
GO:0050821 P protein stabilization
GO:0051091 P positive regulation of DNA-binding transcription factor activity
GO:0060044 P negative regulation of cardiac muscle cell proliferation
GO:0060412 P ventricular septum morphogenesis
GO:0060487 P lung epithelial cell differentiation
GO:0060575 P intestinal epithelial cell differentiation
GO:2000036 P regulation of stem cell population maintenance
FPKM:7.81 TPM:10.41
687 A_BomoN4EE_TR10039_c0_g1_i1
235bp
FPKM:0.00 TPM:0.00
688 A_BomoN4EE_TR1003_c0_g1_i1
364bp
 transposase_[Antheraea_yamamai]
GO:0000014 F single-stranded DNA endodeoxyribonuclease activity
GO:0000729 P DNA double-strand break processing
GO:0000737 P DNA catabolic process, endonucleolytic
GO:0000793 C condensed chromosome
GO:0003677 F DNA binding
GO:0003690 F double-stranded DNA binding
GO:0003697 F single-stranded DNA binding
GO:0003824 F catalytic activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006281 P DNA repair
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006974 P cellular response to DNA damage stimulus
GO:0008152 P metabolic process
GO:0008168 F methyltransferase activity
GO:0008270 F zinc ion binding
GO:0008283 P cell population proliferation
GO:0010452 P histone H3-K36 methylation
GO:0015074 P DNA integration
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0016787 F hydrolase activity
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0031297 P replication fork processing
GO:0032259 P methylation
GO:0034968 P histone lysine methylation
GO:0035861 C site of double-strand break
GO:0042800 F histone methyltransferase activity (H3-K4 specific)
GO:0042803 F protein homodimerization activity
GO:0043566 F DNA binding
GO:0044547 F DNA topoisomerase binding
GO:0044774 P mitotic DNA integrity checkpoint signaling
GO:0046872 F metal ion binding
GO:0046975 F histone methyltransferase activity (H3-K36 specific)
GO:0051568 P histone H3-K4 methylation
GO:0071157 P regulation of cell cycle
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0097676 P histone H3-K36 dimethylation
GO:2000373 P positive regulation of DNA topoisomerase (ATP-hydrolyzing) activity
GO:2001034 P positive regulation of double-strand break repair via nonhomologous end joining
GO:2001251 P negative regulation of chromosome organization
FPKM:0.17 TPM:0.22
689 A_BomoN4EE_TR100400_c0_g1_i1
1108bp
 tropomyosin_[Caenorhabditis_brenneri]
GO:0003779 F actin binding
GO:0005737 C cytoplasm
GO:0005865 C striated muscle thin filament
GO:0007015 P actin filament organization
GO:0030833 P regulation of actin filament polymerization
GO:0030835 P negative regulation of actin filament depolymerization
GO:0034609 P spicule insertion
GO:0040011 P locomotion
GO:0043393 P regulation of protein binding
GO:0051015 F actin filament binding
FPKM:7.59 TPM:10.11
690 A_BomoN4EE_TR100401_c0_g1_i1
2138bp
 PREDICTED:_neurofilament_heavy_polypeptide-like_[Bombyx_mori]
FPKM:18.17 TPM:24.21
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