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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
31 A_BomoN4EE_TR100028_c0_g1_i1
344bp
 Oligopeptide_transporter_OPT_superfamily_[Macrophomina_phaseolina_MS6]
FPKM:0.19 TPM:0.25
32 A_BomoN4EE_TR100029_c0_g1_i1
257bp
FPKM:0.40 TPM:0.54
33 A_BomoN4EE_TR10002_c0_g1_i1
850bp
FPKM:0.53 TPM:0.71
34 A_BomoN4EE_TR100030_c0_g1_i1
359bp
FPKM:1.04 TPM:1.38
35 A_BomoN4EE_TR100031_c0_g1_i1
230bp
 molybdenum_cofactor_synthesis_domain_protein_[Runella_slithyformis_DSM_19594]
FPKM:1.74 TPM:2.32
36 A_BomoN4EE_TR100032_c0_g1_i1
239bp
FPKM:1.02 TPM:1.35
37 A_BomoN4EE_TR100033_c0_g1_i1
477bp
FPKM:0.10 TPM:0.14
38 A_BomoN4EE_TR100034_c0_g1_i1
277bp
FPKM:0.65 TPM:0.86
39 A_BomoN4EE_TR100035_c0_g1_i1
309bp
FPKM:0.24 TPM:0.32
40 A_BomoN4EE_TR100036_c0_g1_i1
354bp
FPKM:0.71 TPM:0.95
41 A_BomoN4EE_TR100037_c0_g1_i1
315bp
FPKM:0.46 TPM:0.62
42 A_BomoN4EE_TR100038_c0_g1_i1
544bp
FPKM:0.33 TPM:0.44
43 A_BomoN4EE_TR100039_c0_g1_i1
406bp
FPKM:0.14 TPM:0.18
44 A_BomoN4EE_TR10003_c0_g1_i1
348bp
 olfactory_receptor_[Bombyx_mori]
FPKM:0.74 TPM:0.99
45 A_BomoN4EE_TR100040_c0_g1_i1
579bp
FPKM:0.45 TPM:0.60
46 A_BomoN4EE_TR100041_c0_g1_i1
224bp
 hypothetical_protein_GNI_113740_[Gregarina_niphandrodes]
FPKM:1.92 TPM:2.55
47 A_BomoN4EE_TR100042_c0_g1_i1
262bp
 acyl-CoA_dehydrogenase_[Pseudoalteromonas_luteoviolacea]
FPKM:1.52 TPM:2.02
48 A_BomoN4EE_TR100043_c0_g1_i1
311bp
 hypothetical_protein_BN2537_11725_[Streptomyces_venezuelae]
FPKM:0.24 TPM:0.32
49 A_BomoN4EE_TR100044_c0_g1_i1
317bp
 carbonate_dehydratase_[Prevotella_sp._10(H)]
FPKM:0.46 TPM:0.61
50 A_BomoN4EE_TR100045_c0_g1_i1
2526bp
 PREDICTED:_zinc_metalloproteinase_nas-4-like_isoform_X2_[Bombyx_mori]
GO:0004222 F metalloendopeptidase activity
GO:0005576 C extracellular region
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0008270 F zinc ion binding
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
FPKM:2.04 TPM:2.71
51 A_BomoN4EE_TR100045_c0_g2_i1
2438bp
 PREDICTED:_zinc_metalloproteinase_nas-4-like_isoform_X2_[Bombyx_mori]
GO:0004222 F metalloendopeptidase activity
GO:0005576 C extracellular region
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0008270 F zinc ion binding
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
FPKM:0.60 TPM:0.79
52 A_BomoN4EE_TR100046_c0_g1_i1
3025bp
 PREDICTED:_ATP-binding_cassette_sub-family_G_member_4_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016887 F ATP hydrolysis activity
GO:0017127 F cholesterol transfer activity
GO:0033344 P cholesterol efflux
GO:0034041 F ABC-type sterol transporter activity
GO:0042803 F protein homodimerization activity
GO:0046982 F protein heterodimerization activity
GO:0055085 P transmembrane transport
FPKM:1.14 TPM:1.51
53 A_BomoN4EE_TR100047_c0_g1_i1
758bp
FPKM:24.93 TPM:33.21
54 A_BomoN4EE_TR100047_c0_g2_i1
5437bp
 PREDICTED:_DIS3-like_exonuclease_2_[Amyelois_transitella]
GO:0000175 F 3'-5'-exoribonuclease activity
GO:0000176 C nuclear exosome (RNase complex)
GO:0000177 C cytoplasmic exosome (RNase complex)
GO:0000287 F magnesium ion binding
GO:0000291 P nuclear-transcribed mRNA catabolic process, exonucleolytic
GO:0000932 C P-body
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0004540 F ribonuclease activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005844 C polysome
GO:0006364 P rRNA processing
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0008266 F poly(U) RNA binding
GO:0008285 P negative regulation of cell population proliferation
GO:0010587 P miRNA catabolic process
GO:0016075 P rRNA catabolic process
GO:0016787 F hydrolase activity
GO:0019827 P stem cell population maintenance
GO:0034427 P nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
GO:0046872 F metal ion binding
GO:0051301 P cell division
GO:0051306 P mitotic sister chromatid separation
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
GO:1990074 P polyuridylation-dependent mRNA catabolic process
FPKM:14.24 TPM:18.97
55 A_BomoN4EE_TR100047_c0_g3_i1
777bp
FPKM:0.00 TPM:0.00
56 A_BomoN4EE_TR100048_c0_g1_i1
1490bp
 PREDICTED:_methyltransferase-like_protein_4_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0006139 P nucleobase-containing compound metabolic process
GO:0008168 F methyltransferase activity
GO:0016740 F transferase activity
GO:0032259 P methylation
FPKM:15.89 TPM:21.17
57 A_BomoN4EE_TR100048_c1_g1_i1
428bp
 Type_III_leader_peptidase_family_protein_[Staphylococcus_capitis]
FPKM:1.72 TPM:2.30
58 A_BomoN4EE_TR100049_c0_g1_i1
4304bp
 PREDICTED:_GTP-binding_protein_1_[Papilio_xuthus]
GO:0000166 F nucleotide binding
GO:0000177 C cytoplasmic exosome (RNase complex)
GO:0003746 F translation elongation factor activity
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006414 P translational elongation
GO:0016020 C membrane
GO:0044822 F RNA binding
GO:0061014 P positive regulation of mRNA catabolic process
FPKM:6.73 TPM:8.96
59 A_BomoN4EE_TR100049_c0_g2_i1
4470bp
 PREDICTED:_GTP-binding_protein_1_[Papilio_xuthus]
GO:0000166 F nucleotide binding
GO:0000177 C cytoplasmic exosome (RNase complex)
GO:0003746 F translation elongation factor activity
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006414 P translational elongation
GO:0016020 C membrane
GO:0044822 F RNA binding
GO:0061014 P positive regulation of mRNA catabolic process
FPKM:44.38 TPM:59.12
60 A_BomoN4EE_TR100049_c0_g3_i1
4219bp
 PREDICTED:_GTP-binding_protein_1_[Papilio_xuthus]
GO:0000166 F nucleotide binding
GO:0000177 C cytoplasmic exosome (RNase complex)
GO:0003746 F translation elongation factor activity
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006414 P translational elongation
GO:0016020 C membrane
GO:0044822 F RNA binding
GO:0061014 P positive regulation of mRNA catabolic process
FPKM:5.41 TPM:7.21
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