SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoN4EE_TR100047_c0_g2_i1
Scaffold_idBomo_Chr11
NCBI non-redundant
(nr)		PREDICTED:_DIS3-like_exonuclease_2_[Amyelois_transitella]
Ontology
GO:0000175 F 3'-5'-exoribonuclease activity
GO:0000176 C nuclear exosome (RNase complex)
GO:0000177 C cytoplasmic exosome (RNase complex)
GO:0000287 F magnesium ion binding
GO:0000291 P nuclear-transcribed mRNA catabolic process, exonucleolytic
GO:0000932 C P-body
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0004540 F ribonuclease activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005844 C polysome
GO:0006364 P rRNA processing
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0008266 F poly(U) RNA binding
GO:0008285 P negative regulation of cell population proliferation
GO:0010587 P miRNA catabolic process
GO:0016075 P rRNA catabolic process
GO:0016787 F hydrolase activity
GO:0019827 P stem cell population maintenance
GO:0034427 P nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
GO:0046872 F metal ion binding
GO:0051301 P cell division
GO:0051306 P mitotic sister chromatid separation
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
GO:1990074 P polyuridylation-dependent mRNA catabolic process
Transcript
Level		FPKM:14.24 TPM:18.97
ORF EntryO_BomoN4EE50629_complete:A_BomoN4EE_TR100047_c0_g2_i1
Sequence
(Nucleotide)
CACGGTGCGCGCGCATCGTAAAATTTCACTCATCAATTTTTCATAACGCGCCTAAAGAAG
TATAACTTCAATAAAAAAAAATTGAAAACTGTAAATGGCTCTCCTGTAAAGTTGCTAAAA
TGTCGCTTTAAACCTAGCTTTTACCCCTCGACTTATATTTTTATAGCATTGTCATAAATA
TGAAAAAAATTGAGTTACAGCTTATTTTGCGATTAGGTACACAGTACGACATCGGCACAG
AACAGTTCGTTACAATTTATTTTAAAAGAAATAACATTCTGTACTTTAAAGTAGACATTC
AACAATCGTAACTTGTGAATATCTGTCTGATCTGAATAACTACTGTAGATATTCACAAGC
AATGTATAAGCGAGTTACGGAATACGGGAAAATCAGGTAATTTTAGGCTTCATTTTTCAG
GGATGAATTCGTTTTTATCTTAAGTTGGATACACGCAGCGCCCACTTCATATTGAGGAGC
TAGCGTAGCTCATACATGAACAATAGGTATGAACGGCGCAGTTCACTGTAAGACGTTTAT
TCGAATTCACTTGCACTGCTGAAATAACAATTCTTCCTGTGTTGTTCGTATATATCCCGT
TCTATTTTCAATATTCTATTAGACTTATTACAACAGATAATATTATTATAAAATATGCAT
AGCGGCACAAAGAAGCAGGAAATTTATTTCATAAATAGTACGAATAGAATTTATAAGGGA
CTAAATATTACAAGATTAGCCCACTGAGTTTCTCACCACATCTTCTCAAGGGATCCCTAT
TCCGATCCGTTGGTAGGTTCTGCGAAGAACTGCTCTCGCTAGGACTGGTGTTACCAAATT
CTCTCGGGTTGAGCCCGTGAGTTCACCTACCGCGCGAAACTGGAATAGCTCTTTTGGCTA
CCAACGATTAAGTAGGGAAAAAAGTACCAGCAAATACCAACCTATTTGAAAAAAATACAA
GATTTTTTCTATTTCAATTGATTTTAAGGACCGTTGAAGTATTTTGTATTAGCTTTAGTG
ACTTACTATATATAACGTTCACGTTCAGCAAACATGCAATGTGCCGCATATTGTACCCTC
AGATCCTTGTGATGCACTCTGCTACTACTACTTGCGATAGCACCACCCAGAGTATAGGTA
ATTGCTCGTCGAATGTCAGAGTTCGATGTGAAATCTAGCCCATAACATCAACCCGCCGAG
TTAGTTCCTCGTCGGAACTTCTCAGCAAGTCCCAATGATCCATTCATAATTGCATTCACA
AAGCAGGTGCCCTCGAGCGGTTGAGTCAGTTGCTAGCAAGCACTCCACTCCTGAGTTCAA
GATGAGTGACTTTATTTACTTTTGATTATGTAAGACGTATGCGGGCCGTATATCCTGATT
ATGCAATTTAAAAATTGAATTGGAAGTTAGATCTGTAATTTTCGACTTTTAAAGAGAATT
TCGTAGGCTTTTATCAAGATCCGAGTGATAGGACACACATTTACAACTTCAGTTTGCTGT
GGGCTATTGAGATAGTCCATTAATACTAACAAAAATATAGACGAATTGAGCGCTCCCTTA
TTTTTTGAGCCTGACATGAGGCTTACAATAAACAATAAAAATTCGCTTTCTCAAAACTGT
AAAGCACATAAATTCACAGTTCAATTATTCTTGAATATAATGAATTCAATTTTTTATTAT
GCAATTATCTATGTATGTTTTATTTGAAACATTTCATTATTATTATTATTATGCATTTAT
CTTAACGCCTAAAGACTTGTTTGCTTTAGGTTTTTAAGACAGTTCTATGAATTGTAAATA
GTAATCCTAATACAACATTGTCAGAATATTATAATTACATACAATATGTCTACACACAGA
CTACAAAATAAGAAACACAGTATTCAATTAATGCTAAAATGATTAGAAGATCCATCTTCT
TGGTCTAATCAGGAATAAAATTTTATACACAATTTTCAAATATATTAAATTACAAACAAC
TTAGTCATTCATATAATCTTTTTAAAAACATTAAATATTTTATAAAAACTGCAGTCACCA
ATAAATTCTAGAGTAAAGAGCTTTCGAAAGGAACGATTTCATTTAACACTAAATTTCATT
AAAATCACTTCATTTATAAAAATAAATTAAGATTTCGGATTAAACTCTCTTAATTTCTAG
AAATAGAATTACTGTTACAAATTGTAACATTACAAAAAATTCAGGTTTCGAATGGAAATT
TTGAAGACCCTCGTCTGGTTGTCGTCGTCATAAAAAAACCAGTAAAATAATATAATGTAA
ACTATTGGGGTCGCACTAATTTAGTTTCGATTTTTACCATGTCATCGCCTTTGTGCATTT
CAACTTGTACAATGGAAAAAACTCCAATTACTTGTTTAGTTTCTGGCAATTCATTCACCG
GTTTCCATTTCAGTTCCATTCGAGCCAACTTCGCAAGTTCTTCGTGTCTAATACACTTAT
ACTCTCCAGGAAAATCATTATTGAAAAATATTCTCCGGTTCAGGCCCATGGAAACAATGA
TAACATCAATATATTTCTCCCTAATGTCAACCACAGCACCTTCAGTGACTATGGGAGAAT
TAAGTTCAATGTACTTTAAAGTGTACAATTCTGTTGACATTTCACCAGCCTTTTTAGCAT
TGTACTTCTGTTTGTTACATTGAGCAGCTATCATGCGTACATCATCTTCCTGCCATGCTG
GAGTTTCTCTATAATTTAAGCTTGCTGCTAATAGCCTATGAACCATAATGTCAGCATATC
TCCTAATAGGACTTGTGAAATGAGTGTACAGGGGCACATTCAGAGCATAATGTTGAAATT
CATCATCATCACAAGCAGCAGCACAAAAATATTTTGCTCTTGTCATAGGTTTTGCACATA
GCAAATTTAAAACCATGGCTCTTCCTTTGTCTGTATTGTCTGGTCCCACATATGGTAGTA
AAGATCTGTGTAGATGTCCAGCCGATTCGATATCTAATTTTATGCCCATTGGTTTTAGAG
ACTTTTCTAGCTGCATCAACATATATTTACTTGGTGGTGGATGACTCCTTAAAAATGCCA
GTTTTGGGTGGTCACTATAAATACGTGTAGCTACAGACATGTTAGCGAGCAACATGAATT
CCTCAATGAGTTGATGGCTTTCTTTACTCTCATATATGCAGTATGACTCTGGTAAACCAC
TAGTAGGATTTAATCTAAAACTAGCCTTAGGTTGATCAATTCTCAATGCACCATTCTCAA
ATCTATTTGCACGAAGAATATTTGACAATTTGCCTAAAATTTTTATTGATTTGTGCACAT
CTTTGTAATCAAAACCATTGTACATTTCTGGAAATTTTATTTGAGCATCCTCTTTGTCAT
CAAGAACATCTTGAGCATGTTCATATGCCAACTGACAGCATGAATTTATAACAGTCCTAG
CAAACCTGTAACTAATAACTTTAGCATCCTTGGTCATTTCCCAAAAAACAGAGAAAGCTA
GTTTATCTACACCAGGGAATAGAGAACAAAGCATACACAAATCATCTGGAAGCATGTGGT
AAGCAGTTTCTACCAAATATATTGTTGTAGCTTTTTCTGCAACTTTCACATCAAGCGGAG
TGTTTTCATTTAAAAAATATGTAACATCAGAAATATGGACTCCGATCTCATAATTACCAT
TTTCTAGTTCCTTGCAAGAGACTGCATCATCAATATCACGGCAATTAAATGGATCAATAC
TAAAGATACATAACATCCGACAGTCTTCTCTCTTTGCTATTTCTTCATCGGGAATTGTAA
AGTCAAGTTGAGGATACAAATCCTTGTATTCAGAGCCAAAAGCAGTAACATCTAAATCAT
TTTCTGCTAATATTGCTTTTGTTTCAGTGACCATGTCTCCTGATTTACCAATATTACCCA
TAATTTTTCCTACAGCAAACCTTGTATCAGACCAATCTATTATTTTTGCAACAAACAATG
TGTTTTCATATTTCTTGGCATCTTCATAAAAATTATCTGGCCATGAAGTAAATGGTATAT
TTATTCTTGGTACTCTGTGATCTCGAGGCACGAACATAGCTTTTTGTCTATTTTTGTCAT
GCATTAGTTTGAGTGAACCAATACAAGTTCTAGTATGAACTTTTTCCTTGATAAAAACTA
CTTTCCCTCTTTTTTGTTCAGGATTAGTAACGTTTTCTTCAGGTTCATTTTCAACTAATT
GTACTATTACTACATCTCCTTCCATTGCACGATTTCTATTCTTAATACCGTCTATTAATA
TATCTTGTTGACTCCGGTCTTGACTTGAAACATATGAATGTTGATATTGTTTTGGATTTA
TCCTCAGAACACCTTCAATAAGCATATTGTTCTTTAAACCTTTCTCAACATCTTCTCCAG
AAAGGTATGCATCAAATTTCTTGTCACCATTTACAAGAGTTTTAGTTAAGCAATTGTTTT
CTGAATTATGCCTCAGTCTGAGCTGTCCAATTTGTATTGTACCAGTTTGTCTTGAAAATG
ATGGATTCAATAAGGGGTGTTGCAATGCATTCTCTATGAACCTTGGAGTGCTAGGTTCAG
AATGAATAAATGTAGAATTTGGAATACAAACAGGTTCTGATCTCTGTCCTGATAATATTA
ATGGAGTGATAGGTACACTAGCAACATGCTCTGGGCTTTGTAAAATATCTCTCATGTGTT
GGATATTCTGCATATATTGATATTGTGGATGGTGACACAGATTTTCTAAATACCTAGAGC
TGGTACTTGCATACAATGGTGTAATCTGTTGGGTAAAATATTCATGCACAGAGAATGTAC
TATTTCTAGGAGACCCAAAATAGTTAAATAAATACTGTGAATTTTGTACTCTGTTTGTGT
TGTTAAAGTTATTCACTGGTACCGTAGGTATTTCCAACTTTTTTAGTCGTTCCTTTTTCT
TGGCGTTTTTTCCTTTCGACGGGGTAGTTGGGGTTACCTGTTCTGTCTCCCCGTTATCAC
TGTCGCTTTCAATTTGCAAATTCTGGCACTTATTGGAAACATCGTTAATTGATGAATTGT
TGAATACCATGGTAGGTACTGTAACTTCTGATCTTTGTTTTTTTTTTGATTTTTTGGGTG
TTCGTTTAGGTGAATCGACTTTGTTTTCATTTATTGCTTTGTCACTTGATGTTTTTTTGT
GGTACTGACGACGTGGAGACCACCGATGTTGTTGGTTCACTGCATGCTGCATCCATTCTT
AATGAGTTATGGCTTGACATGGCGCAAAAAAATAAAAACTGTAAAATACTTATAAGCAGG
TATGGAGTATTACAAGCCTGCTGCTTTTGTCTATAAATGTGAATGATTACATTTCTCCTC
AATATTTACAATAATTTTACACAGAATTATACTCAATTTAATATTTTTAAATATTTATGT
ACGGCCAACGGCTACAAGACCTTATATCCATTCTAAT
(5437 bp)

- SilkBase 1999-2023 -