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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
2371 A_BomoN4EE_TR101512_c0_g1_i1
456bp
FPKM:0.33 TPM:0.44
2372 A_BomoN4EE_TR101513_c0_g1_i1
343bp
 hypothetical_protein_[Paenibacillus_sp._UNC451MF]
FPKM:3.82 TPM:5.09
2373 A_BomoN4EE_TR101514_c0_g1_i1
1066bp
 glycine-rich_protein_[Bombyx_mori]
FPKM:73.65 TPM:98.10
2374 A_BomoN4EE_TR101515_c0_g1_i1
3302bp
 PREDICTED:_uncharacterized_protein_LOC101741884_[Bombyx_mori]
GO:0003714 F transcription corepressor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006275 P regulation of DNA replication
GO:0006461 P protein-containing complex assembly
GO:0007049 P cell cycle
GO:0008156 P negative regulation of DNA replication
GO:0009887 P animal organ morphogenesis
GO:0042826 F histone deacetylase binding
GO:0045786 P negative regulation of cell cycle
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0070491 F DNA-binding transcription factor binding
FPKM:60.07 TPM:80.02
2375 A_BomoN4EE_TR101516_c0_g1_i1
242bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:0.97 TPM:1.30
2376 A_BomoN4EE_TR101517_c0_g1_i1
1888bp
 WW_domain-binding_protein_2_[Papilio_xuthus]
GO:0005515 F protein binding
FPKM:37.26 TPM:49.63
2377 A_BomoN4EE_TR101518_c0_g1_i1
2244bp
 Tetraspanin_[Operophtera_brumata]
FPKM:6.13 TPM:8.16
2378 A_BomoN4EE_TR101519_c0_g1_i1
308bp
FPKM:0.25 TPM:0.33
2379 A_BomoN4EE_TR10151_c0_g1_i1
242bp
 hypothetical_protein_[Rouxiella_chamberiensis]
FPKM:0.97 TPM:1.30
2380 A_BomoN4EE_TR101520_c0_g1_i1
1499bp
 signal_peptidase_18_kDa_subunit_[Bombyx_mori]
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006465 P signal peptide processing
GO:0006508 P proteolysis
GO:0008150 P biological_process
GO:0008233 F peptidase activity
GO:0008236 F serine-type peptidase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0031090 C organelle membrane
GO:0043231 C intracellular membrane-bounded organelle
FPKM:72.12 TPM:96.06
2381 A_BomoN4EE_TR101521_c0_g1_i1
337bp
FPKM:0.00 TPM:0.00
2382 A_BomoN4EE_TR101522_c0_g1_i1
277bp
FPKM:0.97 TPM:1.29
2383 A_BomoN4EE_TR101523_c0_g1_i1
641bp
 unknown_[Bombyx_mori]
FPKM:15.52 TPM:20.68
2384 A_BomoN4EE_TR101524_c0_g1_i1
372bp
 PREDICTED:_transcriptional_repressor_scratch_1,_partial_[Nipponia_nippon]
FPKM:0.32 TPM:0.43
2385 A_BomoN4EE_TR101525_c0_g1_i1
290bp
FPKM:0.29 TPM:0.38
2386 A_BomoN4EE_TR101526_c0_g1_i1
240bp
 hypothetical_protein_[Dyella_japonica]
FPKM:1.00 TPM:1.33
2387 A_BomoN4EE_TR101527_c0_g1_i1
298bp
FPKM:0.53 TPM:0.71
2388 A_BomoN4EE_TR101528_c0_g1_i1
620bp
FPKM:0.15 TPM:0.20
2389 A_BomoN4EE_TR101528_c0_g2_i1
244bp
 PREDICTED:_major_facilitator_superfamily_domain-containing_protein_6_isoform_X3_[Bombyx_mori]
FPKM:0.87 TPM:1.16
2390 A_BomoN4EE_TR101529_c0_g1_i1
316bp
 reverse_transcriptase_[Bombyx_mori]
FPKM:1.15 TPM:1.54
2391 A_BomoN4EE_TR10152_c0_g1_i1
228bp
FPKM:0.00 TPM:0.00
2392 A_BomoN4EE_TR101530_c0_g1_i1
241bp
FPKM:0.49 TPM:0.66
2393 A_BomoN4EE_TR101531_c0_g1_i1
415bp
 hypothetical_protein_KGM_15612_[Danaus_plexippus]
GO:0008802 F betaine-aldehyde dehydrogenase activity
GO:0008812 F choline dehydrogenase activity
GO:0016491 F oxidoreductase activity
GO:0016614 F oxidoreductase activity, acting on CH-OH group of donors
GO:0019285 P glycine betaine biosynthetic process from choline
GO:0050660 F flavin adenine dinucleotide binding
GO:0055114 P obsolete oxidation-reduction process
FPKM:0.39 TPM:0.52
2394 A_BomoN4EE_TR101532_c0_g1_i1
296bp
 sodium:hydrogen_antiporter_[Streptococcus_sp._ACS2]
FPKM:0.27 TPM:0.36
2395 A_BomoN4EE_TR101533_c0_g1_i1
525bp
 LysR_family_transcriptional_regulator_[Salmonella_bongori]
FPKM:0.79 TPM:1.05
2396 A_BomoN4EE_TR101534_c0_g1_i1
386bp
 hypothetical_protein_SPRG_02190_[Saprolegnia_parasitica_CBS_223.65]
FPKM:0.60 TPM:0.80
2397 A_BomoN4EE_TR101535_c0_g1_i1
4594bp
 PREDICTED:_tetratricopeptide_repeat_protein_21B-like_[Bombyx_mori]
GO:0000790 C chromatin
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005929 C cilium
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007224 P smoothened signaling pathway
GO:0008589 P regulation of smoothened signaling pathway
GO:0021591 P ventricular system development
GO:0021798 P forebrain dorsal/ventral pattern formation
GO:0030991 C intraciliary transport particle A
GO:0035721 P intraciliary retrograde transport
GO:0035735 P intraciliary transport involved in cilium assembly
GO:0042995 C cell projection
GO:0060271 P cilium assembly
GO:0061512 P protein localization to cilium
GO:0072372 C cilium
GO:0097542 C ciliary tip
FPKM:12.80 TPM:17.05
2398 A_BomoN4EE_TR101536_c0_g1_i1
501bp
 PREDICTED:_uncharacterized_protein_LOC101739964_[Bombyx_mori]
FPKM:0.75 TPM:1.00
2399 A_BomoN4EE_TR101537_c0_g1_i1
2212bp
 PREDICTED:_WW_domain-binding_protein_11_[Bombyx_mori]
GO:0003697 F single-stranded DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006364 P rRNA processing
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0008599 F protein phosphatase regulator activity
GO:0016607 C nuclear speck
GO:0043231 C intracellular membrane-bounded organelle
GO:0044822 F RNA binding
GO:0045292 P mRNA cis splicing, via spliceosome
GO:0050699 F WW domain binding
GO:0050790 P regulation of catalytic activity
GO:1903146 P regulation of autophagy of mitochondrion
GO:1903955 P positive regulation of protein targeting to mitochondrion
FPKM:18.80 TPM:25.04
2400 A_BomoN4EE_TR101538_c0_g1_i1
2621bp
 Protein_fat-free-like_protein_[Operophtera_brumata]
GO:0000938 C GARP complex
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0032456 P endocytic recycling
FPKM:13.28 TPM:17.69
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