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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaMG_comp11618_c0_seq1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_E3_ubiquitin-protein_ligase_SMURF2_isoform_X1_[Bombyx_mori]
Ontology
GO:0000209 P protein polyubiquitination
GO:0002230 P positive regulation of defense response to virus by host
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006611 P protein export from nucleus
GO:0007179 P transforming growth factor beta receptor signaling pathway
GO:0016020 C membrane
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030154 P cell differentiation
GO:0030279 P negative regulation of ossification
GO:0030424 C axon
GO:0030509 P BMP signaling pathway
GO:0030512 P negative regulation of transforming growth factor beta receptor signaling pathway
GO:0030579 P ubiquitin-dependent SMAD protein catabolic process
GO:0032801 P receptor catabolic process
GO:0034394 P protein localization to cell surface
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0043025 C neuronal cell body
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0061630 F ubiquitin protein ligase activity
GO:0061736 P engulfment of target by autophagosome
GO:0070062 C extracellular exosome
GO:0070411 F I-SMAD binding
GO:0070412 F R-SMAD binding
GO:0071211 P protein targeting to vacuole involved in autophagy
GO:0098779 P positive regulation of mitophagy in response to mitochondrial depolarization
GO:1903861 P positive regulation of dendrite extension
GO:2000060 P positive regulation of ubiquitin-dependent protein catabolic process
Transcript
Level		FPKM:2.94 TPM:2.48
ORF EntryO_TrvaMG304_complete:A_TrvaMG_comp11618_c0_seq1
Sequence
(Nucleotide)
GTTTAGATGTTCATTATTTTGCGTAAAATGATTTTTTGAATCAAATCAAATATTAATTTT
ATTATAAAATGTCGACTCCTATGTCTAACCGTAAATATGGAGCACAAAAGATTCGATTAA
CCATTATATGTGCAAGGAATTTGGTTCGAAAAGATCTTTTTCGTTTGCCAGACCCTTTTG
CCAAGATTTCAGTTGACGGCAGTGGTCAAGTTTATTCAACTAATACTGTGAAAGCAACTC
TTGATCCCAAATGGAATACACATTATGATCTTTATTTGAGCAAAGGAGATGGAATTACCA
TAAGTGTCTGGAATCAACGCAAAGTTCATAAGAGACAAGGATCAGGATTTTTAGGCTGTG
TTCGTATACAACCAACAACTGTACATAAATTAAAAGACACAGGATATCAATGTCTAGAAC
TGTGTGAAGATGGCCAGACAGGTGAAACATGTGGGGTCAAAGGCCAGGTCATCATTTCTC
TCATGTCCAGAGACAGTGCCCGAGGGGAACCAGCCTCAGCAGCTGGAGAAGGCTCCCCTC
TGGCTGTGGTTGGGCCTGCGGGGGAAGTACGACCTCCGAGAGAACCTGTCGTCAGTCCAA
ATCCCTCTCAGTTGAGCTTACCGCCGCACTGGGAGGAACGATTCACTTCTAGTGGAAGGC
CATACTACGTAAATCATTCCACGCGTCGCACGCAATGGGAGCGGCCGACGACATCAGAGA
GTTCAGAGTCACCATCACCACCCACGTCTCCAGCCCTTGCTCCGAGCACACCTACATCAC
CAACGTTAACTAGTGCGCCTTCGTCGCCTGGATCCGATACGGATGTTAATCCAGCTACGT
CAATATCATTAAGACCGGAACCCCAGCCACAAACAGCAGTACGCCGTCAGCAAGCAAATT
GTTCCCCTCTGACGTCTCCTTCATCTCCCACCACAAAGCCAACTACACCGACAGCCGCAG
CTCCAATATCGGCCACCGACTTACCACCAGGATATGAGATGCGCACTACAGCACAAGGGC
AGGTGTACTTCTACAACAGTGCTACCGGTGCGTCCACGTGGCACGACCCGCGCGTCCCCC
CGCACCTGCGACACTGCGCGGCCGAGGCGGGCCCGCTGCCGCCCGGCTGGGAGATGAGAC
ACGCGCCCTCAGGAAGACCGTACTTCGTGGACCATAACAATCGTACCACGCAGTTCACGG
ATCCAAGACTAGCGCTGTCTGCTAGACTTACAAACGATCCAGTCCCAACGAGTACAACAT
CACCAGTACCTCCAACTCCCAACGGCACGGCTCCTGCTCCCGCGCCGTCGAGCGCCGGCT
CCGAGCCTCCCGACGCGGACGCCCTGCCCAAGTATAAGCGGGACTTAGCCGCTAAAGCCA
GGGTGTTGAGAGCTGAACTGCAGGCATTACAACCGCAAACTGGACATTGTAGAATAGAGG
TATCAAGAAACGAAATATTGGAAGAATCATATCGACTCGTAATGAAACTTCGAGGTAAAG
AGCTTCGGAAAAGATTGCTCGTTAAATTCCGAGGTGAAGAAGGACTCGACTACGGTGGCG
TGGCGAGGGAATGGCTACATCTTTTAGGAAGAGAACTATTTAACCCACATTATGGGCTGT
TTCAATACGCAAATGCTGGTGAAGATAGATATGCGCTACAGATTAATCCAGATTCAGGGG
TAAATCCAGAACACTTATCATATTTCCACTTTGCGGGTCGTATTCTCGGCGTAGCTTTAT
TCCACGGACATCAACTAGATGCGGCATTCACAGCGCCCTTCTACAAGCAGCTATTAGGAC
GACCTATTACATTACGGGATATTAAAGATGTAGATCCTGAACTGCATAGATCATTGTCAT
GGATGCTTGAGAACAGTATTCAAGGAGTGATTGATACAACATTCTCAGTTGAATGTTCAT
CTTTCGGTGCCGTTAGAAGCGTGGAGCTGCGACCGGGAGGCGCCGCCGAGACCGTCACTG
ACAATAATAAACGAGAATATGTCAGGCTTTACGTCGCTCACAGGTTCACCCGCGGCGCCG
AACGTCAATGGCTAGCACTACAGCGAGGTCTAGCCGACGTGGTTCCCTCGCAGCTCCTCC
GGCCGCTCTCCGCCCGCGACCTGCAGCCTCTACTGGCCGGTCGCTCGGACCTCGACCCGG
CGGACTGGCGCCGACACACGAGACTCAAGCACCTCTCGGCCGACGAGCCCTTAGCGCACT
GGTTCTGGGAAATAGTTGACGAGTTCGATCAGGAGATGCGAGCGAGGTTGCTGCAGTTCG
TTACTGGATCGAGAAGAGTACCGCTGGCTGGATTTAGAGCTTTGCAGGGTTCGACCGGAG
CAGCGGCTCCCCGATTATTCACCCTGCACCTAGTAGCAGACGCGTCACCCGACTCTTTAC
CGAAAGCGCACACTTGTTTTAATCGACTCGACCTACCGCCCTATCCGAATAAACAGAAAA
TGCACGATAAATTGAAACAAGCCATACTCGAAACGGCAGGATTTGCCGTCGAATGACACA
GAATAACAGGTAAATATCGATACATTTTTACGCACAAAACAAGTAATCGGTCATTGTAAA
TTGATACATTGTTAAGATGTGATAGGAAACAATATTATATTGTCGTATAGAAGTCTCATT
GGATCTAATGGTCATCTAAAAAATGTCTTCATAACATTAATTTGTATTTCTGTCTTCAAT
TGCAGCTATATTTCCTAGAAGTAATAGCATTCCGTTGTAGAAAAGAATGTGTTCATTTTA
TTTTAATTTTACATAATAATATGAATGGTTTTTCCAATGACGAATCTTTTTGAGTAAGTC
ATAAATCTTAATGCATAATGCAACTGTAAATAAATTAACAAAATAAAATTTATGGTAGTT
TGAAGGTGTGTTGGTAATCATGTAAACAAGACTGAAACTGCTTGTGGCAAAAAGATATTT
CGATGAATCTATTGCAATACTAAATTAATAGCAGTCACTATTTGCAATTTTAGTGATATT
AATAAACAGCCTTTAGCTTTAATGAATTAATTGAACATCTACTTTTTTAATGTTCTTGTC
GGTGATTACAAAAAAACATTACCTTAAGAATTAACAAAGATGTTAAAAACAGTATTTATA
ATAGAGGAGGCGACGATGC
(3139 bp)

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