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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaMG_comp114755_c0_seq1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_U5_small_nuclear_ribonucleoprotein_40_kDa_protein_isoform_X2_[Amyelois_transitella]
Ontology
GO:0000375 P RNA splicing, via transesterification reactions
GO:0000398 P mRNA splicing, via spliceosome
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005682 C U5 snRNP
GO:0005732 C sno(s)RNA-containing ribonucleoprotein complex
GO:0005737 C cytoplasm
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0044822 F RNA binding
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:6.76 TPM:5.69
ORF EntryO_TrvaMG24899_complete:A_TrvaMG_comp114755_c0_seq1
Sequence
(Nucleotide)
GTTAGGTTTTGTGTTTTCAGTGTTTGTGTTCCGAAAACAATTTATTAATTTAACAAGATG
CCTGATATTGAAATGAAAAGGAAAGCGGACGAAGTGGCCCTTGTGCCGTCCAAACGAACA
CGACATGAAATCTCGGTGGTCGGTACTAGAGAAAAAGCCGTTGTTACTTCATCTGTCCCA
AGAACATCAAATTTATATGCTCCAATAATGTTACTGGAAGGCCACCAAGGGGAAATATTC
TCAGCTAAATTTCATCCTGAAGGAAAACATTTGGCTTCAGCCGGATTCGACAGACAGATT
TTAATATGGAATGTATACGGTCAATGCGAGAATGTGATGGTGATGAAGGGTCACACCGGT
GCGATCATGCAGCTCTGCTTCTCTCCAGACGGCTCGCATCTGTACACAGGAGCAACGGAC
AACACGGTGGCGGTGTGGGACGTACCTACTGGAACTAGGATTAAGAAGCTGAAGGGACAT
GCGAGTTTCGTTAACTCTGTTTCAGGCGCAAGACGTGGACCAGAGCTCTTAGTGTCAGCA
TCAGATGACAACACAATAAAATTATGGGATGCCAGGAAACGGAACCCAATAGCTTCATTC
GACAGTTCTTACCCAGTCACAAGTGTTCTATTCAATGATACTGCCGAGAAAATCATCTCC
GGAGGTCTCGATAATGTCATCAAAATCTGGGATATCAGAAATAAACAGATTGCTTATAAA
ATTAAAGGACACACAGATACCGTTACAGGTTTGTCATTATCATCGGACGGCGCATACCTC
CTGTCCAACTCAATGGACAGCACGCTTCGTATCTGGGACGTGCGACCGTTCGCTCCCTCG
GAACGATGCGTCAAACTGATGTCCGGACACCAACACAACTTCGAAAAGAATCTACTCAGG
TGTGCGTGGTCGCAAGACGGGTCTAAGGTCTCCGCAGGATCATCAGATAGATTCCTATAT
GTTTGGGACACAACATCGAGAAGAGTTCTGTATAAATTGCCAGGTCATATTGGTTCAGTG
AATGATGTGGACTTCCATCCAACTGAGCCCATAGTGCTATCAGCTTCTAGTGATAAACAA
ATCTATTTAGGAGAAATTGAAAATTAAAGACTGTAATTGTGAATAGTATAATAAGCAAAA
TGAGTTATCAAAAGTTTGAATGAACAATAATAGGATGTGGTTTTGTATGGAAAATTCCGT
ACATTATTATTATTGAAAAGAAAGTCACCATAGCCTCATTTTGGGGATAGTATGTGTCCC
TCGAGGATCTAATGCTATCAGGACAATCACAGAGCAGGTGAAGATGGAGCCTTCTGTTCA
CAAAATCTGCAAGTTACGTCCAAAATAATATGACAGTTCATCTTAATCCGTAGGTTATAG
GTTTCTTCTTCATTTTAAATACAATTTAACCATGGAAACTGTGGTTAGCTGATTAATTAA
ACTCGCAAACGAACTGCAAAGGGTAAAAAAATATGAAATCAGTTTTACGATTTTATCATC
AACTTTATTCATTAAATAATTTAAGAAGATAATGCTTAATTCTTATGCAACATTCTGTGA
ATAAATACTAAACGAGAGTTAAAC
(1584 bp)

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