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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaMG_comp122589_c0_seq1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_SWI/SNF_complex_subunit_SMARCC2_isoform_X2_[Bombyx_mori]
Ontology
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000790 C chromatin
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000980 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006337 P nucleosome disassembly
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007399 P nervous system development
GO:0016514 C SWI/SNF complex
GO:0016568 P chromatin organization
GO:0017053 C transcription repressor complex
GO:0021882 P obsolete regulation of transcription from RNA polymerase II promoter involved in forebrain neuron fate commitment
GO:0031492 F nucleosomal DNA binding
GO:0043044 P chromatin remodeling
GO:0043234 C protein-containing complex
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0071564 C npBAF complex
GO:0071565 C nBAF complex
GO:0090544 C SWI/SNF superfamily-type complex
Transcript
Level		FPKM:4.84 TPM:4.08
ORF EntryO_TrvaMG24938_3prime_partial:A_TrvaMG_comp122589_c0_seq1
Sequence
(Nucleotide)
GGTGGCGGCGAGCGCGGCGGGCGCGCCGTGCGCGGCGGCCGCCTTCACATGCGCCTCCAT
CATGGCTGCCGGGACCTCGTCCTTAATAGCAGCAAATTCGTCCATAGCTGCCTTAGTAGC
CTTGGCCGCGATGCGAGGGTCCACCACTGAAGCGAGGAAGGCCACGGTGCTCATGACGGG
GTTACCAGCCTTGCTGAACGGAATGGGCTGGTACGCTAATGGACCCAGGACTCCACCTGA
ACCTGGTTCATCTAAATAAGGTTCTTCAATGGGCAGTCTCAGGAAGTGCAGGATACACTC
GTCCTGTGTCCTGGTGCCGACGTGTGCTGCGACTCGGTTCCAGTCATCGCGGTGCAGCTC
CAGCCCCTCCAGCAGCAGCAGTGTCTCCTGGTCCGTCCACTCGCGACCACGCTGACCGCC
GCGGTACTGATCTAGTTTGATCCCCGGCGCAGATGGTAGTTCGGGCACCGGCTCCACCTT
GAGGGGCGCGGTGGGGGGAACTCCACTCTCAGCGCCGTTCGGTAAACCTGGCTCCAACTT
AGGAACATTTTCAGCTGGTCTGGGTTGCGCGGGTCTCGTGATGAGCGGCTGCAGGCCGGA
CGGCGTGTCGGAGAGCACGTGGAAGTGTGAGGTGGGAGGCGGACCCATCGCCGTCGGACG
AGAATCAGTCTCCAGCTGATAATTAACAAGTCCCCACTGTTCGAGGAAGCCGTGTACTCT
CATGATGGCGCACACGTCGCCGGCCAGGTTGCGGCGACACGCGGTGCTCGTGAGGTACTC
AGTGGGATTCAAACGGTATGTGTCGATCATGAAGTTTCTGTATGCTAAATAAATTTCAGG
TGTCTTGGACTTATTCTTTCCATTGAAGAACTCGGGTAATGCTCGCTTCTCGATCATGTG
TATGGAGTTGTAGTCGAACCAGGCGGAGTACGATGGAACCACGATGTGATGAGTTTGATC
CGTCACATTGTCTTCTAATTCTTCTTTAGTTAGCATTTCCTGTGTATTAGAATCCGAGTG
TTTCCCTTGCGAGTCGTCGTGCGAGTCGGGATGCGGCGCGGGAGTGGGCGGAGCCTCCAC
TGCGGGCGCGCTGTCCGCCGCACTGGCGCCAGTACTCGCGCCAGCACTGCCACTGGCGCT
GGTACTCGCCGCGCTGGACACCGGGGCGGGTTCTGGCTGTTTCTCAGGTTCAGGTGCGGG
TGTGACGTCAGTGTTGTCACGTGACGCGGCGTCTTCCTCCTCATCCACGTCATTCTCGCG
ACGCTTTGTAACTCGACTCTTCCTTTTGCTGTGTTTCTGCGGCGGCGGTGACGGTGATCG
CTTCCTCTTGCTTCCTTTCTTGCTTTTACTTGACGGCTCGGCGCCGGGGATCAAGTCGTC
CACAGAGAGACGTAGCTTGTGGTTCTTTTTCTTCCCGTGCGAGTCGACCTCGTAGTCCTC
CTCGTTCATCCACTCGTTGTACTGCGGCAGGTCGAGCGCCCAGGACGCCGTGACGCGCCA
CGGCTCGACGCGGTTACACTCCCAGTTTACTGACTCCGGGACGTCCACCGGTAGTTCAGT
CTGCGCCCAAGTATCGTGACTGTCGGGCAGATAGTACCAGTGTACCAGCACGTGGTTCCC
GCGCTTGAACACGGGCCGCGCGTATTCGTCCTCGTGAGGGTCCAGCGTTGGGTATATTAT
GTGAGTCGCGTCCTCTTCGTCCTCACATATTTCTCCCTGGTGGTTAACCACGATGTCTTT
AACTTTGTTAGCGGTTGCCTTATCAACCTCCGGCCGTATATAAACGCAAGGGGAACGGAT
GACGTCAGAACCGAGCAAAGACGACTCGATCTCCATCATCATTTGCACGTTCAGATCTTT
GCGCGAAGGGTTCTTACCGACCTGGAAGTCGAATTTACGCCACCGCTGCTCCGACTTGAA
ACGGAACATGGTGGCGAACACCGTGCACAGTGAACCGCCCGGCTTCATGTCCATGAACAC
TTTCATCGGAAGTCTTAAAAAGGGTGGATCGGAGGCATTCTTGCCTAGTTTGTTTTCTTG
ATACTGAATGAGTTGAATAACCAGTTGGGCCAATCCTTCTTTAGTAGGGGGATCAGTTTG
GACATGCTTTTTACAATTTTTTTGTAACCAAACACGAATCAGATCAAATTGGGATAGCGT
TTCTGGTGACTGAAAGTAATCCGTATTCGGACCACCGTCCTTTTTAGGGCCTATGGTCGT
CATAGTAATTTAAAATCCAACAATTGCCGCACACAAACTATGATTTACTCTTCAAATTTT
AGAAAAAATAAGTGAAAAACAATCAGAAATCAACGAAGATGCCGC
(2325 bp)

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