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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1651 A_TrvaMG_comp12086_c0_seq1
348bp
FPKM:2.37 TPM:1.99
1652 A_TrvaMG_comp1208733_c0_seq1
205bp
FPKM:1.15 TPM:0.97
1653 A_TrvaMG_comp1208763_c0_seq1
284bp
FPKM:0.94 TPM:0.79
1654 A_TrvaMG_comp1208778_c0_seq1
267bp
Midasin_[Papilio_xuthus]
GO:0000027 P ribosomal large subunit assembly
GO:0000166 F nucleotide binding
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006461 P protein-containing complex assembly
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016887 F ATP hydrolysis activity
GO:0045111 C intermediate filament cytoskeleton
GO:0051082 F unfolded protein binding
FPKM:0.81 TPM:0.68
1655 A_TrvaMG_comp12087_c0_seq1
532bp
FPKM:1.94 TPM:1.63
1656 A_TrvaMG_comp12088_c0_seq1
254bp
FPKM:1.22 TPM:1.03
1657 A_TrvaMG_comp12088_c1_seq1
548bp
FPKM:2.02 TPM:1.70
1658 A_TrvaMG_comp120898_c0_seq1
523bp
FPKM:6.04 TPM:5.09
1659 A_TrvaMG_comp120903_c0_seq1
292bp
FPKM:5.33 TPM:4.48
1660 A_TrvaMG_comp12090_c0_seq1
299bp
hypothetical_protein_BRAFLDRAFT_209223_[Branchiostoma_floridae]
FPKM:1.48 TPM:1.24
1661 A_TrvaMG_comp12091_c0_seq1
217bp
FPKM:1.43 TPM:1.20
1662 A_TrvaMG_comp120924_c0_seq1
766bp
FPKM:5.29 TPM:4.45
1663 A_TrvaMG_comp120945_c0_seq1
516bp
PREDICTED:_transcription-associated_zinc_ribbon_protein_isoform_X1_[Bombyx_mori]
GO:0001054 F RNA polymerase I activity
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005736 C RNA polymerase I complex
GO:0006351 P transcription, DNA-templated
GO:0006363 P termination of RNA polymerase I transcription
GO:0008150 P biological_process
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
FPKM:9.28 TPM:7.81
1664 A_TrvaMG_comp12094_c0_seq1
239bp
FPKM:1.79 TPM:1.51
1665 A_TrvaMG_comp12095_c0_seq1
381bp
PREDICTED:_E3_ubiquitin-protein_ligase_MIB1_[Bombyx_mori]
GO:0000151 C ubiquitin ligase complex
GO:0001568 P blood vessel development
GO:0001570 P vasculogenesis
GO:0001756 P somitogenesis
GO:0001885 P endothelial cell development
GO:0002064 P epithelial cell development
GO:0002090 P regulation of receptor internalization
GO:0003407 P neural retina development
GO:0003408 P optic cup formation involved in camera-type eye development
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0007219 P Notch signaling pathway
GO:0007275 P multicellular organism development
GO:0007368 P determination of left/right symmetry
GO:0007417 P central nervous system development
GO:0007420 P brain development
GO:0007507 P heart development
GO:0008270 F zinc ion binding
GO:0008284 P positive regulation of cell population proliferation
GO:0008593 P regulation of Notch signaling pathway
GO:0009880 P embryonic pattern specification
GO:0010001 P glial cell differentiation
GO:0016020 C membrane
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0021508 P floor plate formation
GO:0021510 P spinal cord development
GO:0021514 P ventral spinal cord interneuron differentiation
GO:0021519 P spinal cord association neuron specification
GO:0021520 P spinal cord motor neuron cell fate specification
GO:0021521 P ventral spinal cord interneuron specification
GO:0021536 P diencephalon development
GO:0021546 P rhombomere development
GO:0021654 P rhombomere boundary formation
GO:0021986 P habenula development
GO:0030097 P hemopoiesis
GO:0030139 C endocytic vesicle
GO:0030182 P neuron differentiation
GO:0030318 P melanocyte differentiation
GO:0030902 P hindbrain development
GO:0030903 P notochord development
GO:0031076 P embryonic camera-type eye development
GO:0031398 P positive regulation of protein ubiquitination
GO:0031410 C cytoplasmic vesicle
GO:0035315 P hair cell differentiation
GO:0039022 P pronephric duct development
GO:0042803 F protein homodimerization activity
GO:0043234 C protein-containing complex
GO:0045664 P regulation of neuron differentiation
GO:0045685 P regulation of glial cell differentiation
GO:0045747 P positive regulation of Notch signaling pathway
GO:0046872 F metal ion binding
GO:0048259 P regulation of receptor-mediated endocytosis
GO:0048471 C perinuclear region of cytoplasm
GO:0048514 P blood vessel morphogenesis
GO:0048546 P digestive tract morphogenesis
GO:0048663 P neuron fate commitment
GO:0048665 P neuron fate specification
GO:0048666 P neuron development
GO:0048699 P generation of neurons
GO:0048793 P pronephros development
GO:0048859 P formation of anatomical boundary
GO:0048892 P lateral line nerve development
GO:0048899 P anterior lateral line development
GO:0048916 P posterior lateral line development
GO:0051865 P protein autoubiquitination
GO:0060035 P notochord cell development
GO:0060113 P inner ear receptor cell differentiation
GO:0060218 P hematopoietic stem cell differentiation
GO:0061195 P taste bud formation
GO:0061551 P trigeminal ganglion development
GO:0070086 P ubiquitin-dependent endocytosis
GO:0071599 P otic vesicle development
FPKM:2.56 TPM:2.15
1666 A_TrvaMG_comp1209616_c0_seq1
229bp
PREDICTED:_uncharacterized_protein_LOC101737479_[Bombyx_mori]
FPKM:1.21 TPM:1.02
1667 A_TrvaMG_comp120966_c0_seq1
211bp
FPKM:4.69 TPM:3.94
1668 A_TrvaMG_comp12096_c0_seq1
328bp
Hypothetical_protein_CBG05712_[Caenorhabditis_briggsae]
FPKM:4.05 TPM:3.41
1669 A_TrvaMG_comp12096_c1_seq1
242bp
FPKM:3.81 TPM:3.21
1670 A_TrvaMG_comp12097_c0_seq1
725bp
hypothetical_protein_KGM_03201_[Danaus_plexippus]
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007283 P spermatogenesis
GO:0016568 P chromatin organization
GO:0030154 P cell differentiation
GO:0042393 F histone binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0048635 P negative regulation of muscle organ development
FPKM:1.39 TPM:1.17
1671 A_TrvaMG_comp12097_c0_seq2
279bp
PREDICTED:_scm-like_with_four_MBT_domains_protein_2,_partial_[Amyelois_transitella]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006355 P regulation of transcription, DNA-templated
GO:0010629 P negative regulation of gene expression
GO:0016235 C aggresome
GO:0042393 F histone binding
GO:0043231 C intracellular membrane-bounded organelle
FPKM:1.71 TPM:1.44
1672 A_TrvaMG_comp12098_c0_seq1
667bp
hypothetical_protein_KGM_15745_[Danaus_plexippus]
GO:0000187 P obsolete activation of MAPK activity
GO:0001702 P gastrulation with mouth forming second
GO:0001759 P organ induction
GO:0002088 P lens development in camera-type eye
GO:0003281 P ventricular septum development
GO:0005068 F transmembrane receptor protein tyrosine kinase adaptor activity
GO:0005104 F fibroblast growth factor receptor binding
GO:0005158 F insulin receptor binding
GO:0005168 F neurotrophin TRKA receptor binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0005911 C cell-cell junction
GO:0007169 P transmembrane receptor protein tyrosine kinase signaling pathway
GO:0007405 P neuroblast proliferation
GO:0008543 P fibroblast growth factor receptor signaling pathway
GO:0008595 P anterior/posterior axis specification, embryo
GO:0016020 C membrane
GO:0030900 P forebrain development
GO:0042981 P regulation of apoptotic process
GO:0046619 P lens placode formation involved in camera-type eye formation
GO:0050678 P regulation of epithelial cell proliferation
GO:0060527 P prostate epithelial cord arborization involved in prostate glandular acinus morphogenesis
GO:0070307 P lens fiber cell development
GO:0070372 P regulation of ERK1 and ERK2 cascade
FPKM:3.27 TPM:2.75
1673 A_TrvaMG_comp12098_c1_seq1
352bp
Uncharacterized_protein_OBRU01_13481_[Operophtera_brumata]
FPKM:2.01 TPM:1.69
1674 A_TrvaMG_comp120996_c0_seq1
284bp
FPKM:5.42 TPM:4.56
1675 A_TrvaMG_comp12099_c0_seq1
379bp
FPKM:2.31 TPM:1.95
1676 A_TrvaMG_comp1210105_c0_seq1
261bp
Nucleic-acid-binding_protein_from_transposon_X-element_[Papilio_machaon]
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0006313 P transposition, DNA-mediated
GO:0008270 F zinc ion binding
GO:0019012 C virion component
GO:0019013 C viral nucleocapsid
GO:0046872 F metal ion binding
FPKM:0.86 TPM:0.72
1677 A_TrvaMG_comp12101_c0_seq1
291bp
PREDICTED:_pupal_cuticle_protein_C1B_[Bombyx_mori]
FPKM:3.13 TPM:2.63
1678 A_TrvaMG_comp12102_c0_seq1
321bp
hypothetical_protein_[Campylobacter_phage_IBB35]
FPKM:1.83 TPM:1.54
1679 A_TrvaMG_comp12103_c0_seq1
332bp
DNA_mismatch_repair_protein_Mlh1-like_isoform_1_[Anopheles_sinensis]
FPKM:1.55 TPM:1.30
1680 A_TrvaMG_comp12104_c0_seq1
418bp
FPKM:1.74 TPM:1.46
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