SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/37360
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1561 A_TrvaMG_comp1203116_c0_seq1
274bp
FPKM:0.77 TPM:0.64
1562 A_TrvaMG_comp1203130_c0_seq1
209bp
PREDICTED:_uncharacterized_protein_LOC101742695_[Bombyx_mori]
FPKM:1.61 TPM:1.36
1563 A_TrvaMG_comp12032_c0_seq1
389bp
FPKM:1.82 TPM:1.53
1564 A_TrvaMG_comp12034_c0_seq1
281bp
hypothetical_protein_LOTGIDRAFT_141910_[Lottia_gigantea]
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005575 C cellular_component
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008150 P biological_process
GO:0046872 F metal ion binding
FPKM:1.69 TPM:1.42
1565 A_TrvaMG_comp12035_c0_seq1
476bp
PREDICTED:_WD_repeat-containing_protein_mio_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
FPKM:1.80 TPM:1.52
1566 A_TrvaMG_comp1203677_c0_seq1
225bp
nuclear_pore_complex_protein_Nup155_[Encephalitozoon_romaleae_SJ-2008]
FPKM:1.28 TPM:1.07
1567 A_TrvaMG_comp12036_c0_seq1
902bp
PREDICTED:_uncharacterized_protein_LOC101737909_[Bombyx_mori]
GO:0004871 F obsolete signal transducer activity
GO:0004930 F G protein-coupled receptor activity
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0007165 P signal transduction
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0008277 P regulation of G protein-coupled receptor signaling pathway
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0072659 P protein localization to plasma membrane
FPKM:2.20 TPM:1.85
1568 A_TrvaMG_comp12037_c0_seq1
959bp
Enhancer_of_mRNA-decapping_protein_3_[Papilio_xuthus]
GO:0000932 C P-body
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005875 C microtubule associated complex
GO:0006402 P mRNA catabolic process
GO:0031087 P deadenylation-independent decapping of nuclear-transcribed mRNA
GO:0033962 P P-body assembly
FPKM:3.23 TPM:2.72
1569 A_TrvaMG_comp12037_c0_seq2
470bp
FPKM:1.53 TPM:1.29
1570 A_TrvaMG_comp120380_c0_seq1
705bp
FPKM:4.71 TPM:3.96
1571 A_TrvaMG_comp1203822_c0_seq1
256bp
FPKM:1.20 TPM:1.01
1572 A_TrvaMG_comp1203890_c0_seq1
240bp
hypothetical_protein_KGM_08306_[Danaus_plexippus]
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0007275 P multicellular organism development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016328 C lateral plasma membrane
GO:0060071 P Wnt signaling pathway, planar cell polarity pathway
FPKM:0.71 TPM:0.60
1573 A_TrvaMG_comp12038_c0_seq1
1061bp
scavenger_receptor_type_C_precursor_[Bombyx_mori]
GO:0005576 C extracellular region
GO:0016020 C membrane
FPKM:1.65 TPM:1.39
1574 A_TrvaMG_comp12041_c0_seq1
620bp
PREDICTED:_3-phosphoinositide-dependent_protein_kinase_B-like_[Salmo_salar]
FPKM:1.31 TPM:1.10
1575 A_TrvaMG_comp12042_c0_seq1
1103bp
PREDICTED:_uncharacterized_protein_LOC101744402_[Bombyx_mori]
GO:0016567 P protein ubiquitination
FPKM:1.22 TPM:1.03
1576 A_TrvaMG_comp1204339_c0_seq1
202bp
FPKM:1.81 TPM:1.53
1577 A_TrvaMG_comp1204398_c0_seq1
208bp
FPKM:1.09 TPM:0.92
1578 A_TrvaMG_comp12043_c0_seq1
1017bp
PREDICTED:_mediator_of_RNA_polymerase_II_transcription_subunit_13-like_[Plutella_xylostella]
GO:0001104 F transcription coregulator activity
GO:0004252 F serine-type endopeptidase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006366 P transcription by RNA polymerase II
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0006508 P proteolysis
GO:0007275 P multicellular organism development
GO:0007526 P larval somatic muscle development
GO:0016592 C mediator complex
GO:0022416 P chaeta development
GO:0030177 P positive regulation of Wnt signaling pathway
GO:0036011 P imaginal disc-derived leg segmentation
GO:0045165 P cell fate commitment
GO:0045498 P sex comb development
GO:0048190 P wing disc dorsal/ventral pattern formation
GO:0048749 P compound eye development
GO:0070847 C core mediator complex
FPKM:2.37 TPM:1.99
1579 A_TrvaMG_comp12043_c0_seq2
780bp
PREDICTED:_mediator_of_RNA_polymerase_II_transcription_subunit_13_[Bombyx_mori]
GO:0001104 F transcription coregulator activity
GO:0004252 F serine-type endopeptidase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006366 P transcription by RNA polymerase II
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0006508 P proteolysis
GO:0007275 P multicellular organism development
GO:0007526 P larval somatic muscle development
GO:0016592 C mediator complex
GO:0022416 P chaeta development
GO:0030177 P positive regulation of Wnt signaling pathway
GO:0036011 P imaginal disc-derived leg segmentation
GO:0045165 P cell fate commitment
GO:0045498 P sex comb development
GO:0048190 P wing disc dorsal/ventral pattern formation
GO:0048749 P compound eye development
GO:0070847 C core mediator complex
FPKM:0.98 TPM:0.82
1580 A_TrvaMG_comp1204512_c0_seq1
209bp
PREDICTED:_cytosolic_carboxypeptidase_2-like_[Bombyx_mori]
FPKM:1.07 TPM:0.90
1581 A_TrvaMG_comp1204541_c0_seq1
268bp
FPKM:0.54 TPM:0.45
1582 A_TrvaMG_comp120457_c0_seq1
808bp
NTF2-like_export_factor_1_[Operophtera_brumata]
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006406 P mRNA export from nucleus
GO:0006408 P snRNA export from nucleus
GO:0006409 P tRNA export from nucleus
GO:0006611 P protein export from nucleus
GO:0006810 P transport
GO:0009267 P cellular response to starvation
GO:0015031 P protein transport
GO:0016973 P poly(A)+ mRNA export from nucleus
GO:0045824 P negative regulation of innate immune response
GO:0050829 P defense response to Gram-negative bacterium
GO:0051028 P mRNA transport
FPKM:7.14 TPM:6.01
1583 A_TrvaMG_comp12045_c0_seq1
1003bp
PREDICTED:_histone_transcription_regulator_slm9_[Papilio_xuthus]
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016568 P chromatin organization
FPKM:1.40 TPM:1.18
1584 A_TrvaMG_comp1204648_c0_seq1
223bp
PREDICTED:_uncharacterized_protein_LOC105639232_[Jatropha_curcas]
FPKM:1.31 TPM:1.10
1585 A_TrvaMG_comp12046_c0_seq1
220bp
RelE_toxin_[Yersinia_enterocolitica]
FPKM:0.46 TPM:0.38
1586 A_TrvaMG_comp12049_c0_seq1
856bp
FPKM:1.74 TPM:1.46
1587 A_TrvaMG_comp12050_c0_seq1
1509bp
PREDICTED:_polyribonucleotide_nucleotidyltransferase_1,_mitochondrial_[Amyelois_transitella]
GO:0000175 F 3'-5'-exoribonuclease activity
GO:0000957 P mitochondrial RNA catabolic process
GO:0000958 P mitochondrial mRNA catabolic process
GO:0000962 P positive regulation of mitochondrial RNA catabolic process
GO:0000964 P mitochondrial RNA 5'-end processing
GO:0000965 P mitochondrial RNA 3'-end processing
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0004654 F polyribonucleotide nucleotidyltransferase activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005758 C mitochondrial intermembrane space
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0006401 P RNA catabolic process
GO:0006402 P mRNA catabolic process
GO:0006810 P transport
GO:0008266 F poly(U) RNA binding
GO:0016020 C membrane
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0034046 F poly(G) binding
GO:0034599 P cellular response to oxidative stress
GO:0035198 F miRNA binding
GO:0035458 P cellular response to interferon-beta
GO:0035927 P RNA import into mitochondrion
GO:0035928 P rRNA import into mitochondrion
GO:0043457 P regulation of cellular respiration
GO:0043631 P RNA polyadenylation
GO:0044822 F RNA binding
GO:0045025 C mitochondrial degradosome
GO:0045926 P negative regulation of growth
GO:0051260 P protein homooligomerization
GO:0061014 P positive regulation of mRNA catabolic process
GO:0070207 P protein homotrimerization
GO:0070584 P mitochondrion morphogenesis
GO:0071042 P nuclear polyadenylation-dependent mRNA catabolic process
GO:0071850 P regulation of cell cycle
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
GO:0097222 P mitochondrial mRNA polyadenylation
GO:2000627 P positive regulation of miRNA catabolic process
GO:2000772 P regulation of cellular senescence
FPKM:3.40 TPM:2.86
1588 A_TrvaMG_comp12050_c1_seq1
400bp
PREDICTED:_polyribonucleotide_nucleotidyltransferase_1,_mitochondrial-like_[Plutella_xylostella]
GO:0000175 F 3'-5'-exoribonuclease activity
GO:0000957 P mitochondrial RNA catabolic process
GO:0000958 P mitochondrial mRNA catabolic process
GO:0000962 P positive regulation of mitochondrial RNA catabolic process
GO:0000964 P mitochondrial RNA 5'-end processing
GO:0000965 P mitochondrial RNA 3'-end processing
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0004654 F polyribonucleotide nucleotidyltransferase activity
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005758 C mitochondrial intermembrane space
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0006401 P RNA catabolic process
GO:0006402 P mRNA catabolic process
GO:0006810 P transport
GO:0008266 F poly(U) RNA binding
GO:0016020 C membrane
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0034046 F poly(G) binding
GO:0034599 P cellular response to oxidative stress
GO:0035198 F miRNA binding
GO:0035927 P RNA import into mitochondrion
GO:0035928 P rRNA import into mitochondrion
GO:0043457 P regulation of cellular respiration
GO:0043631 P RNA polyadenylation
GO:0045025 C mitochondrial degradosome
GO:0045926 P negative regulation of growth
GO:0051260 P protein homooligomerization
GO:0061014 P positive regulation of mRNA catabolic process
GO:0070207 P protein homotrimerization
GO:0070584 P mitochondrion morphogenesis
GO:0071042 P nuclear polyadenylation-dependent mRNA catabolic process
GO:0071850 P regulation of cell cycle
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
GO:0097222 P mitochondrial mRNA polyadenylation
GO:2000627 P positive regulation of miRNA catabolic process
GO:2000772 P regulation of cellular senescence
FPKM:2.11 TPM:1.78
1589 A_TrvaMG_comp12051_c0_seq1
317bp
PREDICTED:_carboxypeptidase_D-like_isoform_X4_[Bombyx_mori]
GO:0004180 F carboxypeptidase activity
GO:0004181 F metallocarboxypeptidase activity
GO:0004185 F serine-type carboxypeptidase activity
GO:0005615 C extracellular space
GO:0005886 C plasma membrane
GO:0006508 P proteolysis
GO:0006518 P peptide metabolic process
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0008270 F zinc ion binding
GO:0009986 C cell surface
GO:0016020 C membrane
GO:0016485 P protein processing
GO:0016787 F hydrolase activity
GO:0031225 C anchored component of membrane
GO:0046872 F metal ion binding
GO:0070062 C extracellular exosome
FPKM:2.07 TPM:1.74
1590 A_TrvaMG_comp1205203_c0_seq1
246bp
Cdc48-like_ATPase_[Ordospora_colligata_OC4]
GO:0000166 F nucleotide binding
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005795 C Golgi stack
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0006891 P intra-Golgi vesicle-mediated transport
GO:0015031 P protein transport
GO:0016192 P vesicle-mediated transport
GO:0016887 F ATP hydrolysis activity
GO:0042144 P vacuole fusion, non-autophagic
GO:0043001 P Golgi to plasma membrane protein transport
GO:0048211 P Golgi vesicle docking
FPKM:1.00 TPM:0.84
previous next from show/37360

- SilkBase 1999-2023 -