SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/37360
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1261 A_TrvaMG_comp11839_c0_seq1
1150bp
Mo-molybdopterin_cofactor_sulfurase_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0005739 C mitochondrion
GO:0005741 C mitochondrial outer membrane
GO:0005743 C mitochondrial inner membrane
GO:0008940 F nitrate reductase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016491 F oxidoreductase activity
GO:0030151 F molybdenum ion binding
GO:0030170 F pyridoxal phosphate binding
GO:0042126 P nitrate metabolic process
GO:0043546 F molybdopterin cofactor binding
GO:0051410 P detoxification of nitrogen compound
GO:0055114 P obsolete oxidation-reduction process
FPKM:2.17 TPM:1.83
1262 A_TrvaMG_comp11840_c0_seq1
509bp
FPKM:3.10 TPM:2.61
1263 A_TrvaMG_comp118412_c0_seq1
1665bp
hypothetical_protein_KGM_08319_[Danaus_plexippus]
GO:0007409 P axonogenesis
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:7.61 TPM:6.40
1264 A_TrvaMG_comp1184195_c0_seq1
204bp
FPKM:1.75 TPM:1.47
1265 A_TrvaMG_comp11841_c0_seq1
999bp
FPKM:3.25 TPM:2.73
1266 A_TrvaMG_comp11842_c0_seq1
872bp
FPKM:2.68 TPM:2.25
1267 A_TrvaMG_comp11844_c0_seq1
1678bp
PREDICTED:_CTL-like_protein_1_isoform_X1_[Papilio_polytes]
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:1.98 TPM:1.67
1268 A_TrvaMG_comp1184561_c0_seq1
332bp
PREDICTED:_uncharacterized_protein_LOC101742417_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007049 P cell cycle
GO:0016568 P chromatin organization
FPKM:0.69 TPM:0.58
1269 A_TrvaMG_comp11845_c0_seq1
1675bp
hypothetical_protein_KGM_19553_[Danaus_plexippus]
FPKM:2.04 TPM:1.72
1270 A_TrvaMG_comp11846_c0_seq1
777bp
hypothetical_protein_[Vibrio_sinaloensis]
FPKM:2.84 TPM:2.39
1271 A_TrvaMG_comp1184724_c0_seq1
212bp
FPKM:0.51 TPM:0.43
1272 A_TrvaMG_comp1184747_c0_seq1
215bp
PREDICTED:_UDP-glucuronate_4-epimerase_6-like_[Gossypium_raimondii]
FPKM:1.47 TPM:1.24
1273 A_TrvaMG_comp11848_c0_seq1
276bp
FPKM:3.01 TPM:2.54
1274 A_TrvaMG_comp11849_c0_seq1
1357bp
DNApol-iota_[Operophtera_brumata]
GO:0003677 F DNA binding
GO:0003684 F damaged DNA binding
GO:0003887 F DNA-directed DNA polymerase activity
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0019985 P translesion synthesis
GO:0042276 P error-prone translesion synthesis
GO:0043231 C intracellular membrane-bounded organelle
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
FPKM:2.66 TPM:2.24
1275 A_TrvaMG_comp1185004_c0_seq1
231bp
FPKM:1.18 TPM:0.99
1276 A_TrvaMG_comp1185033_c0_seq1
209bp
PREDICTED:_muscle_M-line_assembly_protein_unc-89-like_[Amyelois_transitella]
FPKM:1.07 TPM:0.90
1277 A_TrvaMG_comp1185052_c0_seq1
211bp
FPKM:1.56 TPM:1.31
1278 A_TrvaMG_comp11851_c0_seq1
269bp
FPKM:5.32 TPM:4.48
1279 A_TrvaMG_comp1185205_c0_seq1
222bp
PREDICTED:_putative_ATP-dependent_RNA_helicase_TDRD12_[Plutella_xylostella]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0030154 P cell differentiation
GO:0031047 P gene silencing by RNA
GO:0031965 C nuclear membrane
GO:0043186 C P granule
GO:0051321 P meiotic cell cycle
GO:1990923 C PET complex
FPKM:1.33 TPM:1.12
1280 A_TrvaMG_comp1185211_c0_seq1
260bp
PREDICTED:_LOW_QUALITY_PROTEIN:_2-oxoglutarate_dehydrogenase,_mitochondrial-like_[Bombyx_mori]
GO:0004591 F oxoglutarate dehydrogenase (succinyl-transferring) activity
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0005829 C cytosol
GO:0006091 P generation of precursor metabolites and energy
GO:0006096 P glycolytic process
GO:0006099 P tricarboxylic acid cycle
GO:0006103 P 2-oxoglutarate metabolic process
GO:0006104 P succinyl-CoA metabolic process
GO:0006554 P lysine catabolic process
GO:0006734 P NADH metabolic process
GO:0008152 P metabolic process
GO:0016491 F oxidoreductase activity
GO:0016624 F oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
GO:0021695 P cerebellar cortex development
GO:0021756 P striatum development
GO:0021766 P hippocampus development
GO:0021794 P thalamus development
GO:0021860 P pyramidal neuron development
GO:0022028 P tangential migration from the subventricular zone to the olfactory bulb
GO:0030976 F thiamine pyrophosphate binding
GO:0031072 F heat shock protein binding
GO:0031966 C mitochondrial membrane
GO:0034602 F oxoglutarate dehydrogenase (NAD+) activity
GO:0045252 C oxoglutarate dehydrogenase complex
GO:0046487 P glyoxylate metabolic process
GO:0046872 F metal ion binding
GO:0051087 F chaperone binding
GO:0055114 P obsolete oxidation-reduction process
GO:0061034 P olfactory bulb mitral cell layer development
FPKM:0.58 TPM:0.49
1281 A_TrvaMG_comp1185248_c0_seq1
252bp
chain_length_determination_protein_[Escherichia_albertii]
FPKM:1.25 TPM:1.05
1282 A_TrvaMG_comp1185256_c0_seq1
209bp
FPKM:1.61 TPM:1.36
1283 A_TrvaMG_comp11852_c0_seq1
596bp
endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:2.42 TPM:2.04
1284 A_TrvaMG_comp118530_c0_seq1
331bp
FPKM:1.38 TPM:1.16
1285 A_TrvaMG_comp11854_c0_seq1
1280bp
PREDICTED:_uncharacterized_protein_LOC101744966,_partial_[Bombyx_mori]
FPKM:0.00 TPM:0.00
1286 A_TrvaMG_comp11854_c0_seq2
738bp
PREDICTED:_protein_tramtrack,_alpha_isoform-like_[Amyelois_transitella]
GO:0001964 P startle response
GO:0002121 P inter-male aggressive behavior
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0007409 P axonogenesis
GO:0007411 P axon guidance
GO:0007464 P R3/R4 cell fate commitment
GO:0007526 P larval somatic muscle development
GO:0008406 P gonad development
GO:0010906 P regulation of glucose metabolic process
GO:0016199 P axon midline choice point recognition
GO:0019730 P antimicrobial humoral response
GO:0022008 P neurogenesis
GO:0030154 P cell differentiation
GO:0031987 P locomotion involved in locomotory behavior
GO:0035167 P larval lymph gland hemopoiesis
GO:0044719 P regulation of imaginal disc-derived wing size
GO:0045467 P R7 cell development
GO:0045476 P nurse cell apoptotic process
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0048813 P dendrite morphogenesis
GO:0048854 P brain morphogenesis
FPKM:1.99 TPM:1.67
1287 A_TrvaMG_comp11854_c0_seq3
1281bp
PREDICTED:_uncharacterized_protein_LOC101744966,_partial_[Bombyx_mori]
FPKM:2.84 TPM:2.39
1288 A_TrvaMG_comp11856_c0_seq1
1054bp
PREDICTED:_DEAD-box_ATP-dependent_RNA_helicase_17-like_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005794 C Golgi apparatus
GO:0010501 P RNA secondary structure unwinding
GO:0016787 F hydrolase activity
GO:0042254 P ribosome biogenesis
GO:0043231 C intracellular membrane-bounded organelle
GO:0044822 F RNA binding
FPKM:3.08 TPM:2.60
1289 A_TrvaMG_comp118575_c0_seq1
387bp
FPKM:2.36 TPM:1.99
1290 A_TrvaMG_comp11857_c0_seq1
350bp
GCC2_and_GCC3_family_protein_[Brugia_malayi]
FPKM:2.65 TPM:2.23
previous next from show/37360

- SilkBase 1999-2023 -