SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/38954
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
631 A_ErmoMG_comp16451_c0_seq1
823bp
PREDICTED:_integrator_complex_subunit_1-like_[Bombyx_mori]
GO:0001832 P blastocyst growth
GO:0001833 P inner cell mass cell proliferation
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016180 P snRNA processing
GO:0031965 C nuclear membrane
GO:0032039 C integrator complex
GO:0034474 P U2 snRNA 3'-end processing
GO:0043066 P negative regulation of apoptotic process
GO:0043154 P negative regulation of cysteine-type endopeptidase activity involved in apoptotic process
FPKM:2.57 TPM:1.89
632 A_ErmoMG_comp16452_c0_seq1
490bp
PREDICTED:_peptidoglycan_recognition_protein-like_isoform_X2_[Bombyx_mori]
GO:0002376 P immune system process
GO:0005576 C extracellular region
GO:0008270 F zinc ion binding
GO:0008745 F N-acetylmuramoyl-L-alanine amidase activity
GO:0009253 P peptidoglycan catabolic process
GO:0016787 F hydrolase activity
GO:0045087 P innate immune response
GO:0046872 F metal ion binding
FPKM:2.99 TPM:2.20
633 A_ErmoMG_comp16456_c0_seq1
866bp
PREDICTED:_uncharacterized_protein_LOC101742468_isoform_X1_[Bombyx_mori]
FPKM:3.09 TPM:2.27
634 A_ErmoMG_comp16458_c0_seq1
244bp
PREDICTED:_claspin_homolog,_partial_[Bombyx_mori]
FPKM:5.77 TPM:4.25
635 A_ErmoMG_comp164618_c0_seq1
374bp
hypothetical_protein_KGM_17710_[Danaus_plexippus]
GO:0000398 P mRNA splicing, via spliceosome
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006464 P cellular protein modification process
GO:0022008 P neurogenesis
GO:0031386 F protein tag
GO:0034126 P positive regulation of MyD88-dependent toll-like receptor signaling pathway
FPKM:5.28 TPM:3.88
636 A_ErmoMG_comp16461_c0_seq1
344bp
hypothetical_protein_M407DRAFT_70373_[Tulasnella_calospora_MUT_4182]
FPKM:4.22 TPM:3.11
637 A_ErmoMG_comp16463_c0_seq1
344bp
hypothetical_protein_KGM_03658_[Danaus_plexippus]
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0005905 C clathrin-coated pit
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006897 P endocytosis
GO:0008565 F obsolete protein transporter activity
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0030117 C membrane coat
GO:0030131 C clathrin adaptor complex
GO:0048488 P synaptic vesicle endocytosis
FPKM:3.12 TPM:2.30
638 A_ErmoMG_comp16465_c0_seq1
850bp
PREDICTED:_snurportin-1_[Amyelois_transitella]
GO:0000339 F RNA cap binding
GO:0000387 P spliceosomal snRNP assembly
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005643 C nuclear pore
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006606 P protein import into nucleus
GO:0006810 P transport
GO:0008565 F obsolete protein transporter activity
GO:0051170 P import into nucleus
GO:0061015 P snRNA import into nucleus
GO:0070062 C extracellular exosome
FPKM:2.26 TPM:1.66
639 A_ErmoMG_comp16466_c0_seq1
293bp
hypothetical_protein_[Clostridium_kluyveri]
FPKM:2.45 TPM:1.81
640 A_ErmoMG_comp16467_c0_seq1
559bp
hypothetical_protein_KGM_06190_[Danaus_plexippus]
FPKM:2.59 TPM:1.90
641 A_ErmoMG_comp16471_c0_seq1
434bp
FPKM:2.29 TPM:1.69
642 A_ErmoMG_comp16472_c0_seq1
365bp
FPKM:3.00 TPM:2.20
643 A_ErmoMG_comp164734_c0_seq1
406bp
MULTISPECIES:_histidine_kinase_[Acinetobacter]
FPKM:5.35 TPM:3.93
644 A_ErmoMG_comp16473_c0_seq1
563bp
PREDICTED:_UPF0568_protein_C14orf166_[Amyelois_transitella]
GO:0000993 F RNA polymerase II complex binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005815 C microtubule organizing center
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006388 P tRNA splicing, via endonucleolytic cleavage and ligation
GO:0042802 F identical protein binding
GO:0044822 F RNA binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048471 C perinuclear region of cytoplasm
GO:0072669 C tRNA-splicing ligase complex
FPKM:3.18 TPM:2.34
645 A_ErmoMG_comp16474_c0_seq1
401bp
FPKM:1.86 TPM:1.37
646 A_ErmoMG_comp164756_c0_seq1
348bp
FPKM:5.22 TPM:3.84
647 A_ErmoMG_comp16475_c0_seq1
278bp
hypothetical_protein_KGM_11261_[Danaus_plexippus]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005743 C mitochondrial inner membrane
GO:0005814 C centriole
GO:0005856 C cytoskeleton
GO:0006281 P DNA repair
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006886 P intracellular protein transport
GO:0006974 P cellular response to DNA damage stimulus
GO:0007283 P spermatogenesis
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0016925 P protein sumoylation
GO:0031625 F ubiquitin protein ligase binding
GO:0032183 F SUMO binding
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0043547 P positive regulation of GTPase activity
GO:0046872 F metal ion binding
FPKM:4.35 TPM:3.20
648 A_ErmoMG_comp16476_c0_seq1
807bp
PREDICTED:_transcription_elongation_factor_B_polypeptide_3_[Papilio_machaon]
FPKM:2.24 TPM:1.65
649 A_ErmoMG_comp16477_c0_seq1
336bp
PREDICTED:_uncharacterized_protein_LOC101744544_[Bombyx_mori]
FPKM:3.63 TPM:2.67
650 A_ErmoMG_comp16480_c0_seq1
300bp
PREDICTED:_voltage-dependent_T-type_calcium_channel_subunit_alpha-1H_isoform_X1_[Fopius_arisanus]
FPKM:2.34 TPM:1.72
651 A_ErmoMG_comp16481_c0_seq1
1070bp
PREDICTED:_LOW_QUALITY_PROTEIN:_remodeling_and_spacing_factor_1-like_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006334 P nucleosome assembly
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006352 P DNA-templated transcription, initiation
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0016568 P chromatin organization
GO:0016584 P nucleosome positioning
GO:0016887 F ATP hydrolysis activity
GO:0031213 C RSF complex
GO:0034080 P CENP-A containing chromatin assembly
GO:0042393 F histone binding
GO:0043392 P negative regulation of DNA binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0050434 P positive regulation of viral transcription
FPKM:2.25 TPM:1.65
652 A_ErmoMG_comp16481_c1_seq1
266bp
PREDICTED:_LOW_QUALITY_PROTEIN:_remodeling_and_spacing_factor_1-like_[Bombyx_mori]
FPKM:3.87 TPM:2.85
653 A_ErmoMG_comp16482_c0_seq1
436bp
FPKM:3.16 TPM:2.32
654 A_ErmoMG_comp16483_c0_seq1
608bp
PREDICTED:_breast_cancer_type_2_susceptibility_protein_homolog_[Amyelois_transitella]
FPKM:2.32 TPM:1.70
655 A_ErmoMG_comp16484_c0_seq1
238bp
PREDICTED:_sperm-associated_antigen_6-like_[Amyelois_transitella]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0005929 C cilium
GO:0005930 C axoneme
GO:0007286 P spermatid development
GO:0015630 C microtubule cytoskeleton
GO:0030030 P cell projection organization
GO:0031514 C motile cilium
GO:0042995 C cell projection
FPKM:3.83 TPM:2.82
656 A_ErmoMG_comp16485_c0_seq1
351bp
endonuclease-reverse_transcriptase_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
FPKM:2.13 TPM:1.57
657 A_ErmoMG_comp16486_c0_seq1
651bp
putative_acetyltransferase_ACT20_[Spodoptera_litura]
GO:0005575 C cellular_component
GO:0007275 P multicellular organism development
GO:0007586 P digestion
GO:0008152 P metabolic process
GO:0009636 P response to toxic substance
GO:0016787 F hydrolase activity
GO:0017171 F serine hydrolase activity
GO:0019233 P sensory perception of pain
GO:0052689 F carboxylic ester hydrolase activity
FPKM:1.97 TPM:1.45
658 A_ErmoMG_comp16487_c0_seq1
381bp
hypothetical_protein_[Desulfobacterium_autotrophicum]
FPKM:0.78 TPM:0.57
659 A_ErmoMG_comp16489_c0_seq1
332bp
PREDICTED:_kelch-like_protein_26_isoform_X2_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0015629 C actin cytoskeleton
FPKM:3.32 TPM:2.44
660 A_ErmoMG_comp164916_c0_seq1
876bp
PREDICTED:_cyclin-related_protein_FAM58A_[Amyelois_transitella]
GO:0000307 C cyclin-dependent protein kinase holoenzyme complex
GO:0005634 C nucleus
GO:0016538 F cyclin-dependent protein serine/threonine kinase regulator activity
GO:0030295 F protein kinase activator activity
GO:0032147 P activation of protein kinase activity
GO:0043410 P positive regulation of MAPK cascade
GO:0045737 P positive regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:1901409 P positive regulation of phosphorylation of RNA polymerase II C-terminal domain
FPKM:4.77 TPM:3.51
previous next from show/38954

- SilkBase 1999-2023 -