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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
601 A_ErmoMG_comp16420_c0_seq1
491bp
PREDICTED:_aminoacylase-1-like_[Bombyx_mori]
FPKM:3.09 TPM:2.27
602 A_ErmoMG_comp16421_c0_seq1
771bp
argonaute_1_[Bombyx_mori]
GO:0000340 F RNA 7-methylguanosine cap binding
GO:0000932 C P-body
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005844 C polysome
GO:0005845 C mRNA cap binding complex
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0008150 P biological_process
GO:0016442 C RISC complex
GO:0016787 F hydrolase activity
GO:0016891 F endoribonuclease activity, producing 5'-phosphomonoesters
GO:0030154 P cell differentiation
GO:0030529 C ribonucleoprotein complex
GO:0031047 P gene silencing by RNA
GO:0031054 P pre-miRNA processing
GO:0035068 C RISC complex
GO:0035197 F siRNA binding
GO:0035198 F miRNA binding
GO:0035278 P miRNA-mediated gene silencing by inhibition of translation
GO:0035279 P miRNA-mediated gene silencing by mRNA destabilization
GO:0045947 P negative regulation of translational initiation
GO:0046872 F metal ion binding
GO:0060213 P positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:0070551 F endoribonuclease activity, cleaving siRNA-paired mRNA
GO:0070578 C RISC-loading complex
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
GO:1900153 P positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
FPKM:2.55 TPM:1.87
603 A_ErmoMG_comp16422_c0_seq1
384bp
FPKM:3.07 TPM:2.26
604 A_ErmoMG_comp16423_c0_seq1
536bp
PREDICTED:_ATP-binding_cassette_sub-family_A_member_1-like_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005215 F transporter activity
GO:0005524 F ATP binding
GO:0005615 C extracellular space
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016887 F ATP hydrolysis activity
GO:0042626 F ATPase-coupled transmembrane transporter activity
GO:0051384 P response to glucocorticoid
GO:0055085 P transmembrane transport
GO:0097208 C alveolar lamellar body
GO:0097233 C alveolar lamellar body membrane
FPKM:2.27 TPM:1.67
605 A_ErmoMG_comp16425_c0_seq1
502bp
FPKM:2.79 TPM:2.05
606 A_ErmoMG_comp16427_c0_seq1
455bp
FPKM:2.37 TPM:1.75
607 A_ErmoMG_comp16428_c0_seq1
445bp
PREDICTED:_zinc_finger_protein_567-like_isoform_X4_[Bombyx_mori]
FPKM:2.21 TPM:1.62
608 A_ErmoMG_comp16428_c0_seq2
215bp
PREDICTED:_zinc_finger_protein_567-like_isoform_X4_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0004803 F transposase activity
GO:0006310 P DNA recombination
GO:0006313 P transposition, DNA-mediated
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0043565 F sequence-specific DNA binding
GO:0046872 F metal ion binding
FPKM:2.49 TPM:1.84
609 A_ErmoMG_comp16428_c0_seq3
446bp
PREDICTED:_zinc_finger_protein_567-like_isoform_X4_[Bombyx_mori]
FPKM:0.00 TPM:0.00
610 A_ErmoMG_comp16429_c0_seq1
648bp
FPKM:2.43 TPM:1.79
611 A_ErmoMG_comp16430_c0_seq1
423bp
FPKM:2.64 TPM:1.95
612 A_ErmoMG_comp16432_c0_seq1
661bp
ring_and_YY1_binding_protein_[Bombyx_mori]
GO:0003713 F transcription coactivator activity
GO:0003714 F transcription corepressor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
FPKM:2.58 TPM:1.90
613 A_ErmoMG_comp16433_c0_seq1
1083bp
FPKM:2.49 TPM:1.84
614 A_ErmoMG_comp16434_c0_seq1
294bp
PREDICTED:_uncharacterized_protein_LOC101746166_[Bombyx_mori]
FPKM:3.41 TPM:2.51
615 A_ErmoMG_comp16435_c0_seq1
1508bp
PREDICTED:_integrator_complex_subunit_4_[Amyelois_transitella]
GO:0005634 C nucleus
FPKM:2.02 TPM:1.49
616 A_ErmoMG_comp16436_c0_seq1
1174bp
PREDICTED:_uncharacterized_protein_LOC101742695_[Bombyx_mori]
FPKM:2.24 TPM:1.65
617 A_ErmoMG_comp16437_c0_seq1
930bp
PREDICTED:_protein_abrupt-like_[Bombyx_mori]
FPKM:1.84 TPM:1.36
618 A_ErmoMG_comp164388_c0_seq1
1668bp
PREDICTED:_pre-mRNA-processing_factor_19_[Bombyx_mori]
GO:0000209 P protein polyubiquitination
GO:0000244 P spliceosomal tri-snRNP complex assembly
GO:0000245 P spliceosomal complex assembly
GO:0000398 P mRNA splicing, via spliceosome
GO:0000974 C Prp19 complex
GO:0001833 P inner cell mass cell proliferation
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005662 C DNA replication factor A complex
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0005811 C lipid droplet
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0006281 P DNA repair
GO:0006283 P transcription-coupled nucleotide-excision repair
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006397 P mRNA processing
GO:0006974 P cellular response to DNA damage stimulus
GO:0008380 P RNA splicing
GO:0008610 P lipid biosynthetic process
GO:0010498 P proteasomal protein catabolic process
GO:0016020 C membrane
GO:0016567 P protein ubiquitination
GO:0016607 C nuclear speck
GO:0016874 F ligase activity
GO:0034450 F ubiquitin-ubiquitin ligase activity
GO:0034613 P cellular protein localization
GO:0035861 C site of double-strand break
GO:0042802 F identical protein binding
GO:0045665 P negative regulation of neuron differentiation
GO:0048026 P positive regulation of mRNA splicing, via spliceosome
GO:0048711 P positive regulation of astrocyte differentiation
GO:0061630 F ubiquitin protein ligase activity
GO:0070534 P protein K63-linked ubiquitination
GO:0071013 C catalytic step 2 spliceosome
GO:0072422 P DNA damage checkpoint signaling
FPKM:3.30 TPM:2.43
619 A_ErmoMG_comp16438_c0_seq1
268bp
YqcI/YcgG_family_protein_[Bacillus_trypoxylicola]
FPKM:4.40 TPM:3.24
620 A_ErmoMG_comp16439_c0_seq1
300bp
PREDICTED:_LOW_QUALITY_PROTEIN:_RNA_exonuclease_4_[Bombyx_mori]
FPKM:4.22 TPM:3.10
621 A_ErmoMG_comp16440_c0_seq1
599bp
FPKM:2.36 TPM:1.74
622 A_ErmoMG_comp16442_c0_seq1
681bp
PREDICTED:_pre-mRNA-splicing_factor_CWC25_homolog_isoform_X1_[Amyelois_transitella]
GO:0005654 C nucleoplasm
FPKM:3.18 TPM:2.34
623 A_ErmoMG_comp164432_c0_seq1
2848bp
PREDICTED:_focal_adhesion_kinase_1_isoform_X3_[Amyelois_transitella]
GO:0000165 P MAPK cascade
GO:0000166 F nucleotide binding
GO:0000226 P microtubule cytoskeleton organization
GO:0001525 P angiogenesis
GO:0001568 P blood vessel development
GO:0001570 P vasculogenesis
GO:0001725 C stress fiber
GO:0001764 P neuron migration
GO:0001890 P placenta development
GO:0001932 P regulation of protein phosphorylation
GO:0001934 P positive regulation of protein phosphorylation
GO:0003007 P heart morphogenesis
GO:0003779 F actin binding
GO:0004672 F protein kinase activity
GO:0004713 F protein tyrosine kinase activity
GO:0004715 F non-membrane spanning protein tyrosine kinase activity
GO:0004871 F obsolete signal transducer activity
GO:0005088 F guanyl-nucleotide exchange factor activity
GO:0005102 F signaling receptor binding
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005815 C microtubule organizing center
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0005938 C cell cortex
GO:0006468 P protein phosphorylation
GO:0006921 P cellular component disassembly involved in execution phase of apoptosis
GO:0007172 P signal complex assembly
GO:0007173 P epidermal growth factor receptor signaling pathway
GO:0007179 P transforming growth factor beta receptor signaling pathway
GO:0007229 P integrin-mediated signaling pathway
GO:0007275 P multicellular organism development
GO:0007411 P axon guidance
GO:0008284 P positive regulation of cell population proliferation
GO:0008360 P regulation of cell shape
GO:0008432 F JUN kinase binding
GO:0009790 P embryo development
GO:0010594 P regulation of endothelial cell migration
GO:0010632 P regulation of epithelial cell migration
GO:0014068 P positive regulation of phosphatidylinositol 3-kinase signaling
GO:0016020 C membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016324 C apical plasma membrane
GO:0016740 F transferase activity
GO:0018108 P peptidyl-tyrosine phosphorylation
GO:0019901 F protein kinase binding
GO:0021955 P central nervous system neuron axonogenesis
GO:0022408 P negative regulation of cell-cell adhesion
GO:0030010 P establishment of cell polarity
GO:0030027 C lamellipodium
GO:0030054 C cell junction
GO:0030198 P extracellular matrix organization
GO:0030335 P positive regulation of cell migration
GO:0031234 C extrinsic component of cytoplasmic side of plasma membrane
GO:0033628 P regulation of cell adhesion mediated by integrin
GO:0038007 P netrin-activated signaling pathway
GO:0038083 P peptidyl-tyrosine autophosphorylation
GO:0038096 P Fc-gamma receptor signaling pathway involved in phagocytosis
GO:0040023 P nuclear migration
GO:0042127 P regulation of cell population proliferation
GO:0042169 F SH2 domain binding
GO:0043066 P negative regulation of apoptotic process
GO:0043087 P regulation of GTPase activity
GO:0043542 P endothelial cell migration
GO:0043547 P positive regulation of GTPase activity
GO:0043552 P positive regulation of phosphatidylinositol 3-kinase activity
GO:0045087 P innate immune response
GO:0045667 P regulation of osteoblast differentiation
GO:0045860 P positive regulation of protein kinase activity
GO:0046621 P negative regulation of organ growth
GO:0046777 P protein autophosphorylation
GO:0048010 P vascular endothelial growth factor receptor signaling pathway
GO:0048013 P ephrin receptor signaling pathway
GO:0048870 P cell motility
GO:0050771 P negative regulation of axonogenesis
GO:0051493 P regulation of cytoskeleton organization
GO:0051893 P regulation of focal adhesion assembly
GO:0051897 P positive regulation of protein kinase B signaling
GO:0051964 P negative regulation of synapse assembly
GO:0060396 P growth hormone receptor signaling pathway
GO:0071560 P cellular response to transforming growth factor beta stimulus
GO:1900024 P regulation of substrate adhesion-dependent cell spreading
GO:2000060 P positive regulation of ubiquitin-dependent protein catabolic process
GO:2000811 P negative regulation of anoikis
FPKM:2.77 TPM:2.04
624 A_ErmoMG_comp16443_c0_seq1
342bp
hypothetical_protein_[Edaphobacter_aggregans]
FPKM:2.83 TPM:2.08
625 A_ErmoMG_comp16443_c0_seq2
428bp
FPKM:0.61 TPM:0.45
626 A_ErmoMG_comp16444_c0_seq1
343bp
hypothetical_protein_REIP_1330_[Rickettsia_endosymbiont_of_Ixodes_pacificus]
FPKM:3.32 TPM:2.44
627 A_ErmoMG_comp16445_c0_seq1
770bp
FPKM:1.84 TPM:1.35
628 A_ErmoMG_comp16448_c0_seq1
300bp
hypothetical_protein_[Spirochaeta_cellobiosiphila]
FPKM:4.22 TPM:3.10
629 A_ErmoMG_comp16449_c0_seq1
315bp
FPKM:3.85 TPM:2.84
630 A_ErmoMG_comp16450_c0_seq1
1091bp
PREDICTED:_probable_cleavage_and_polyadenylation_specificity_factor_subunit_2,_partial_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005847 C mRNA cleavage and polyadenylation specificity factor complex
GO:0006378 P mRNA polyadenylation
GO:0006379 P mRNA cleavage
GO:0006397 P mRNA processing
GO:0006398 P mRNA 3'-end processing by stem-loop binding and cleavage
GO:0022008 P neurogenesis
FPKM:2.59 TPM:1.91
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