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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1081 A_ErmoMG_comp16941_c0_seq1
641bp
PREDICTED:_INO80_complex_subunit_C_[Amyelois_transitella]
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
GO:0031011 C Ino80 complex
GO:0071339 C MLL1 complex
FPKM:3.73 TPM:2.74
1082 A_ErmoMG_comp16944_c0_seq1
683bp
FPKM:3.23 TPM:2.38
1083 A_ErmoMG_comp169451_c0_seq1
283bp
FPKM:3.67 TPM:2.70
1084 A_ErmoMG_comp16945_c0_seq1
960bp
mrg_[Bombyx_mori]
GO:0000724 P double-strand break repair via homologous recombination
GO:0003682 F chromatin binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006338 P chromatin remodeling
GO:0006342 P heterochromatin assembly
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
GO:0008283 P cell population proliferation
GO:0016568 P chromatin organization
GO:0016575 P histone deacetylation
GO:0016580 C Sin3 complex
GO:0035267 C NuA4 histone acetyltransferase complex
GO:0040008 P regulation of growth
GO:0043967 P histone H4 acetylation
GO:0043968 P histone H2A acetylation
GO:0047485 F protein N-terminus binding
FPKM:2.46 TPM:1.81
1085 A_ErmoMG_comp169476_c0_seq1
529bp
FPKM:3.94 TPM:2.90
1086 A_ErmoMG_comp16947_c0_seq1
614bp
PREDICTED:_serine/threonine_kinase_LKB1_isoform_X1_[Bombyx_mori]
FPKM:3.39 TPM:2.49
1087 A_ErmoMG_comp169483_c0_seq1
392bp
Cadherin-related_family_member_3,_partial_[Phaethon_lepturus]
FPKM:2.82 TPM:2.08
1088 A_ErmoMG_comp16948_c0_seq1
227bp
PREDICTED:_uncharacterized_protein_LOC106709010_[Papilio_machaon]
FPKM:3.02 TPM:2.22
1089 A_ErmoMG_comp16949_c0_seq1
356bp
PREDICTED:_PHD_finger_protein_14_[Bombyx_mori]
FPKM:4.16 TPM:3.06
1090 A_ErmoMG_comp16950_c0_seq1
693bp
PREDICTED:_tyrosine-protein_phosphatase_non-receptor_type_23_[Bombyx_mori]
GO:0004721 F phosphoprotein phosphatase activity
GO:0004725 F protein tyrosine phosphatase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005856 C cytoskeleton
GO:0005929 C cilium
GO:0006470 P protein dephosphorylation
GO:0006810 P transport
GO:0010633 P negative regulation of epithelial cell migration
GO:0015031 P protein transport
GO:0016023 C cytoplasmic vesicle
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0019901 F protein kinase binding
GO:0030030 P cell projection organization
GO:0030334 P regulation of cell migration
GO:0031410 C cytoplasmic vesicle
GO:0035335 P peptidyl-tyrosine dephosphorylation
GO:0036064 C ciliary basal body
GO:0042995 C cell projection
GO:0043162 P ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
GO:0060271 P cilium assembly
GO:0070062 C extracellular exosome
GO:1903387 P positive regulation of homophilic cell adhesion
GO:1903393 P positive regulation of adherens junction organization
GO:2000643 P positive regulation of early endosome to late endosome transport
FPKM:2.77 TPM:2.04
1091 A_ErmoMG_comp16951_c0_seq1
907bp
PREDICTED:_facilitated_trehalose_transporter_Tret1-like_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0005351 F carbohydrate:proton symporter activity
GO:0005355 F glucose transmembrane transporter activity
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0015574 F trehalose transmembrane transporter activity
GO:0015771 P trehalose transport
GO:0015992 P proton transmembrane transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0022891 F transmembrane transporter activity
GO:0035428 P hexose transmembrane transport
GO:0046323 P glucose import
GO:0055085 P transmembrane transport
GO:1904659 P glucose transmembrane transport
FPKM:3.80 TPM:2.79
1092 A_ErmoMG_comp16952_c0_seq1
1120bp
PREDICTED:_eIF2B-gamma_protein_isoform_X1_[Bombyx_mori]
GO:0003743 F translation initiation factor activity
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005737 C cytoplasm
GO:0005851 C eukaryotic translation initiation factor 2B complex
GO:0006412 P translation
GO:0006413 P translational initiation
GO:0008135 F translation factor activity, RNA binding
GO:0009058 P biosynthetic process
GO:0009408 P response to heat
GO:0009749 P response to glucose
GO:0014003 P oligodendrocyte development
GO:0016779 F nucleotidyltransferase activity
GO:0021766 P hippocampus development
GO:0043434 P response to peptide hormone
GO:0043547 P positive regulation of GTPase activity
GO:0051716 P cellular response to stimulus
FPKM:2.67 TPM:1.96
1093 A_ErmoMG_comp16953_c0_seq1
622bp
FPKM:3.10 TPM:2.28
1094 A_ErmoMG_comp16954_c0_seq1
334bp
FPKM:0.19 TPM:0.14
1095 A_ErmoMG_comp16956_c0_seq1
309bp
FPKM:4.44 TPM:3.26
1096 A_ErmoMG_comp16957_c0_seq1
440bp
PREDICTED:_ralA-binding_protein_1_[Amyelois_transitella]
GO:0005096 F GTPase activator activity
GO:0005515 F protein binding
GO:0005575 C cellular_component
GO:0006898 P receptor-mediated endocytosis
GO:0007165 P signal transduction
GO:0007275 P multicellular organism development
GO:0016020 C membrane
GO:0017160 F small GTPase binding
GO:0043547 P positive regulation of GTPase activity
GO:0046578 P regulation of Ras protein signal transduction
FPKM:3.87 TPM:2.84
1097 A_ErmoMG_comp169580_c0_seq1
1061bp
PREDICTED:_ribosome_biogenesis_protein_WDR12_homolog_[Amyelois_transitella]
GO:0000463 P maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000466 P maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0030687 C preribosome, large subunit precursor
GO:0042254 P ribosome biogenesis
GO:0042273 P ribosomal large subunit biogenesis
GO:0043021 F ribonucleoprotein complex binding
GO:0070545 C PeBoW complex
FPKM:3.93 TPM:2.89
1098 A_ErmoMG_comp16958_c0_seq1
799bp
FPKM:3.46 TPM:2.54
1099 A_ErmoMG_comp169606_c0_seq1
1251bp
mitochondrial_transcription_factor_A_[Bombyx_mori]
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0001223 F transcription coactivator binding
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0005829 C cytosol
GO:0006261 P DNA-dependent DNA replication
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006356 P regulation of transcription by RNA polymerase I
GO:0006366 P transcription by RNA polymerase II
GO:0006390 P mitochondrial transcription
GO:0006391 P transcription initiation from mitochondrial promoter
GO:0007005 P mitochondrion organization
GO:0008301 F DNA binding, bending
GO:0031072 F heat shock protein binding
GO:0033108 P mitochondrial respiratory chain complex assembly
GO:0042645 C mitochondrial nucleoid
GO:0044822 F RNA binding
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0070363 F mitochondrial promoter sequence-specific DNA binding
FPKM:3.63 TPM:2.67
1100 A_ErmoMG_comp16960_c0_seq1
1207bp
PREDICTED:_glycoprotein-N-acetylgalactosamine_3-beta-galactosyltransferase_1_isoform_X1_[Amyelois_transitella]
GO:0006486 P protein glycosylation
GO:0009247 P glycolipid biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016263 F glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity
GO:0016267 P O-glycan processing, core 1
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0021551 P central nervous system morphogenesis
GO:0046872 F metal ion binding
GO:0048531 F beta-1,3-galactosyltransferase activity
GO:0051489 P regulation of filopodium assembly
GO:1902037 P negative regulation of hematopoietic stem cell differentiation
FPKM:2.10 TPM:1.54
1101 A_ErmoMG_comp169610_c0_seq1
406bp
uncharacterized_protein_c14orf166b_homolog_[Stylonychia_lemnae]
FPKM:1.83 TPM:1.35
1102 A_ErmoMG_comp16962_c0_seq1
260bp
FPKM:1.56 TPM:1.15
1103 A_ErmoMG_comp16962_c0_seq2
261bp
FPKM:0.00 TPM:0.00
1104 A_ErmoMG_comp16964_c0_seq1
819bp
FPKM:1.87 TPM:1.38
1105 A_ErmoMG_comp16965_c0_seq1
554bp
FPKM:2.71 TPM:1.99
1106 A_ErmoMG_comp16967_c0_seq1
243bp
FPKM:7.29 TPM:5.36
1107 A_ErmoMG_comp16968_c0_seq1
239bp
FPKM:6.06 TPM:4.46
1108 A_ErmoMG_comp16969_c0_seq1
797bp
PREDICTED:_poly(A)_RNA_polymerase,_mitochondrial_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000287 F magnesium ion binding
GO:0002134 F UTP binding
GO:0003723 F RNA binding
GO:0004652 F polynucleotide adenylyltransferase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0006351 P transcription, DNA-templated
GO:0006378 P mRNA polyadenylation
GO:0006397 P mRNA processing
GO:0016740 F transferase activity
GO:0030145 F manganese ion binding
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0043231 C intracellular membrane-bounded organelle
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0071044 P histone mRNA catabolic process
FPKM:2.79 TPM:2.05
1109 A_ErmoMG_comp169700_c0_seq1
1193bp
PREDICTED:_uncharacterized_protein_LOC101744657_[Bombyx_mori]
FPKM:3.62 TPM:2.66
1110 A_ErmoMG_comp169702_c0_seq1
889bp
small_nuclear_ribonucleoprotein_protein_F_[Bombyx_mori]
GO:0000398 P mRNA splicing, via spliceosome
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005685 C U1 snRNP
GO:0005732 C sno(s)RNA-containing ribonucleoprotein complex
GO:0006397 P mRNA processing
GO:0007052 P mitotic spindle organization
GO:0008380 P RNA splicing
GO:0030529 C ribonucleoprotein complex
GO:0030532 C small nuclear ribonucleoprotein complex
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
FPKM:4.44 TPM:3.27
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