SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/38954
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1051 A_ErmoMG_comp16911_c0_seq1
472bp
FPKM:4.62 TPM:3.40
1052 A_ErmoMG_comp16913_c0_seq1
831bp
PREDICTED:_ATP-binding_cassette_sub-family_B_member_10,_mitochondrial_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005215 F transporter activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006810 P transport
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016887 F ATP hydrolysis activity
GO:0032592 C integral component of mitochondrial membrane
GO:0042626 F ATPase-coupled transmembrane transporter activity
GO:0042803 F protein homodimerization activity
GO:0055085 P transmembrane transport
FPKM:3.62 TPM:2.67
1053 A_ErmoMG_comp16914_c0_seq1
313bp
WD_repeat_and_FYVE_domain-containing_protein_3_[Papilio_machaon]
GO:0003831 F beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity
GO:0005543 F phospholipid binding
GO:0005545 F 1-phosphatidylinositol binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005737 C cytoplasm
GO:0005776 C autophagosome
GO:0006914 P autophagy
GO:0012505 C endomembrane system
GO:0016020 C membrane
GO:0016234 C inclusion body
GO:0016239 P positive regulation of macroautophagy
GO:0016605 C PML body
GO:0019898 C extrinsic component of membrane
GO:0031965 C nuclear membrane
GO:0034274 C Atg12-Atg5-Atg16 complex
GO:0035973 P aggrephagy
GO:0046872 F metal ion binding
GO:0097635 C extrinsic component of autophagosome membrane
FPKM:2.38 TPM:1.75
1054 A_ErmoMG_comp16914_c1_seq1
892bp
PREDICTED:_WD_repeat_and_FYVE_domain-containing_protein_3_[Bombyx_mori]
GO:0003831 F beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity
GO:0005515 F protein binding
GO:0005545 F 1-phosphatidylinositol binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005737 C cytoplasm
GO:0005776 C autophagosome
GO:0006914 P autophagy
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016234 C inclusion body
GO:0016239 P positive regulation of macroautophagy
GO:0016605 C PML body
GO:0019898 C extrinsic component of membrane
GO:0031965 C nuclear membrane
GO:0034274 C Atg12-Atg5-Atg16 complex
GO:0035973 P aggrephagy
GO:0046872 F metal ion binding
GO:0097635 C extrinsic component of autophagosome membrane
FPKM:2.53 TPM:1.86
1055 A_ErmoMG_comp16915_c0_seq1
213bp
FPKM:2.54 TPM:1.87
1056 A_ErmoMG_comp16915_c0_seq2
356bp
FeS_assembly_protein_SufB_[Peptoniphilus_sp._DNF00840]
FPKM:2.61 TPM:1.92
1057 A_ErmoMG_comp16916_c0_seq1
255bp
FPKM:0.65 TPM:0.48
1058 A_ErmoMG_comp16916_c0_seq2
275bp
FPKM:2.78 TPM:2.04
1059 A_ErmoMG_comp16918_c0_seq1
668bp
hypothetical_protein_KGM_21051_[Danaus_plexippus]
GO:0005576 C extracellular region
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005886 C plasma membrane
GO:0008201 F heparin binding
GO:0009986 C cell surface
GO:0010916 P negative regulation of very-low-density lipoprotein particle clearance
GO:0031982 C vesicle
GO:0032091 P negative regulation of protein binding
GO:0035473 F lipase binding
GO:0048019 F receptor antagonist activity
GO:0048237 C rough endoplasmic reticulum lumen
GO:0050750 F low-density lipoprotein particle receptor binding
GO:0070326 F very-low-density lipoprotein particle receptor binding
GO:1900116 P extracellular negative regulation of signal transduction
GO:1900222 P negative regulation of amyloid-beta clearance
FPKM:2.90 TPM:2.14
1060 A_ErmoMG_comp16919_c0_seq1
206bp
FPKM:1.69 TPM:1.25
1061 A_ErmoMG_comp16921_c0_seq1
1143bp
PREDICTED:_mevalonate_kinase_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004496 F mevalonate kinase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006629 P lipid metabolic process
GO:0006694 P steroid biosynthetic process
GO:0006696 P ergosterol biosynthetic process
GO:0008152 P metabolic process
GO:0008202 P steroid metabolic process
GO:0008299 P isoprenoid biosynthetic process
GO:0010142 P farnesyl diphosphate biosynthetic process, mevalonate pathway
GO:0016126 P sterol biosynthetic process
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0016773 F phosphotransferase activity, alcohol group as acceptor
GO:0019287 P isopentenyl diphosphate biosynthetic process, mevalonate pathway
FPKM:3.61 TPM:2.66
1062 A_ErmoMG_comp16922_c0_seq1
1408bp
PREDICTED:_major_facilitator_superfamily_domain-containing_protein_10-like_[Bombyx_mori]
GO:0006810 P transport
GO:0006915 P apoptotic process
GO:0008493 F tetracycline transmembrane transporter activity
GO:0008514 F organic anion transmembrane transporter activity
GO:0015904 P tetracycline transmembrane transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030659 C cytoplasmic vesicle membrane
GO:0031526 C brush border membrane
GO:0043252 P sodium-independent organic anion transport
GO:0055085 P transmembrane transport
FPKM:2.65 TPM:1.95
1063 A_ErmoMG_comp169234_c0_seq1
375bp
FPKM:6.37 TPM:4.69
1064 A_ErmoMG_comp169237_c0_seq1
427bp
target_of_rapamycin_isoform_2_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0000166 F nucleotide binding
GO:0001030 F RNA polymerase III type 1 promoter sequence-specific DNA binding
GO:0001031 F RNA polymerase III type 2 promoter sequence-specific DNA binding
GO:0001032 F RNA polymerase III type 3 promoter sequence-specific DNA binding
GO:0001156 F TFIIIC-class transcription factor complex binding
GO:0001933 P negative regulation of protein phosphorylation
GO:0001934 P positive regulation of protein phosphorylation
GO:0001938 P positive regulation of endothelial cell proliferation
GO:0003007 P heart morphogenesis
GO:0003179 P heart valve morphogenesis
GO:0004674 F protein serine/threonine kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005741 C mitochondrial outer membrane
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0005942 C phosphatidylinositol 3-kinase complex
GO:0005979 P regulation of glycogen biosynthetic process
GO:0006109 P regulation of carbohydrate metabolic process
GO:0006112 P energy reserve metabolic process
GO:0006207 P 'de novo' pyrimidine nucleobase biosynthetic process
GO:0006281 P DNA repair
GO:0006468 P protein phosphorylation
GO:0006950 P response to stress
GO:0007050 P regulation of cell cycle
GO:0007165 P signal transduction
GO:0007281 P germ cell development
GO:0007420 P brain development
GO:0007569 P cell aging
GO:0007584 P response to nutrient
GO:0007616 P long-term memory
GO:0008144 F obsolete drug binding
GO:0008542 P visual learning
GO:0009791 P post-embryonic development
GO:0010507 P negative regulation of autophagy
GO:0010592 P positive regulation of lamellipodium assembly
GO:0010628 P positive regulation of gene expression
GO:0010831 P positive regulation of myotube differentiation
GO:0010942 P positive regulation of cell death
GO:0010976 P positive regulation of neuron projection development
GO:0012505 C endomembrane system
GO:0014042 P positive regulation of neuron maturation
GO:0014736 P negative regulation of muscle atrophy
GO:0016020 C membrane
GO:0016049 P cell growth
GO:0016236 P macroautophagy
GO:0016242 P negative regulation of macroautophagy
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016605 C PML body
GO:0016740 F transferase activity
GO:0016773 F phosphotransferase activity, alcohol group as acceptor
GO:0018105 P peptidyl-serine phosphorylation
GO:0018107 P peptidyl-threonine phosphorylation
GO:0019901 F protein kinase binding
GO:0019904 F protein domain specific binding
GO:0021510 P spinal cord development
GO:0030030 P cell projection organization
GO:0030163 P protein catabolic process
GO:0030425 C dendrite
GO:0030838 P positive regulation of actin filament polymerization
GO:0031090 C organelle membrane
GO:0031295 P T cell costimulation
GO:0031397 P negative regulation of protein ubiquitination
GO:0031529 P ruffle organization
GO:0031641 P regulation of myelination
GO:0031669 P cellular response to nutrient levels
GO:0031929 P TOR signaling
GO:0031931 C TORC1 complex
GO:0031932 C TORC2 complex
GO:0031998 P regulation of fatty acid beta-oxidation
GO:0032095 P regulation of response to food
GO:0032868 P response to insulin
GO:0032956 P regulation of actin cytoskeleton organization
GO:0032991 C protein-containing complex
GO:0035176 P social behavior
GO:0035264 P multicellular organism growth
GO:0040007 P growth
GO:0042060 P wound healing
GO:0042220 P response to cocaine
GO:0043022 F ribosome binding
GO:0043025 C neuronal cell body
GO:0043087 P regulation of GTPase activity
GO:0043200 P response to amino acid
GO:0043231 C intracellular membrane-bounded organelle
GO:0043278 P response to morphine
GO:0043610 P regulation of carbohydrate utilization
GO:0045429 P positive regulation of nitric oxide biosynthetic process
GO:0045670 P regulation of osteoclast differentiation
GO:0045727 P positive regulation of translation
GO:0045792 P negative regulation of cell size
GO:0045859 P regulation of protein kinase activity
GO:0045945 P positive regulation of transcription by RNA polymerase III
GO:0046777 P protein autophosphorylation
GO:0046889 P positive regulation of lipid biosynthetic process
GO:0048015 P phosphatidylinositol-mediated signaling
GO:0048255 P mRNA stabilization
GO:0048661 P positive regulation of smooth muscle cell proliferation
GO:0048714 P positive regulation of oligodendrocyte differentiation
GO:0048738 P cardiac muscle tissue development
GO:0050731 P positive regulation of peptidyl-tyrosine phosphorylation
GO:0050769 P positive regulation of neurogenesis
GO:0050882 P voluntary musculoskeletal movement
GO:0051219 F phosphoprotein binding
GO:0051496 P positive regulation of stress fiber assembly
GO:0051534 P negative regulation of calcineurin-NFAT signaling cascade
GO:0051896 P regulation of protein kinase B signaling
GO:0051897 P positive regulation of protein kinase B signaling
GO:0055006 P cardiac cell development
GO:0055013 P cardiac muscle cell development
GO:0060048 P cardiac muscle contraction
GO:0060135 P maternal process involved in female pregnancy
GO:0060252 P positive regulation of glial cell proliferation
GO:0060999 P positive regulation of dendritic spine development
GO:0061051 P positive regulation of cell growth involved in cardiac muscle cell development
GO:0071456 P cellular response to hypoxia
GO:0090335 P regulation of brown fat cell differentiation
GO:0090559 P regulation of membrane permeability
GO:1900034 P regulation of cellular response to heat
GO:1901216 P positive regulation of neuron death
GO:1901838 P positive regulation of transcription of nucleolar large rRNA by RNA polymerase I
GO:1904000 P positive regulation of eating behavior
GO:1904056 P positive regulation of cholangiocyte proliferation
GO:1904058 P positive regulation of sensory perception of pain
GO:1904193 P negative regulation of cholangiocyte apoptotic process
GO:1904197 P positive regulation of granulosa cell proliferation
GO:1904206 P positive regulation of skeletal muscle hypertrophy
GO:1904213 P negative regulation of iodide transmembrane transport
FPKM:3.52 TPM:2.59
1065 A_ErmoMG_comp16923_c0_seq1
448bp
FPKM:3.40 TPM:2.50
1066 A_ErmoMG_comp16928_c0_seq1
321bp
hypothetical_protein_[Aphanizomenon_flos-aquae]
FPKM:5.18 TPM:3.81
1067 A_ErmoMG_comp16929_c0_seq1
599bp
putative_cationic_amino_acid_transporter_[Danaus_plexippus]
GO:0003333 P amino acid transmembrane transport
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006865 P amino acid transport
GO:0015171 F amino acid transmembrane transporter activity
GO:0015175 F neutral amino acid transmembrane transporter activity
GO:0015184 F L-cystine transmembrane transporter activity
GO:0015804 P neutral amino acid transport
GO:0015811 P L-cystine transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016324 C apical plasma membrane
GO:0031526 C brush border membrane
GO:0042605 F peptide antigen binding
FPKM:2.44 TPM:1.80
1068 A_ErmoMG_comp169301_c0_seq1
342bp
FPKM:6.67 TPM:4.91
1069 A_ErmoMG_comp16930_c0_seq1
1039bp
FPKM:2.21 TPM:1.62
1070 A_ErmoMG_comp169318_c0_seq1
332bp
FPKM:4.68 TPM:3.45
1071 A_ErmoMG_comp16932_c0_seq1
287bp
RNA-directed_DNA_polymerase_(reverse_transcriptase)_domain_containing_protein_[Haemonchus_contortus]
FPKM:3.83 TPM:2.82
1072 A_ErmoMG_comp16933_c0_seq1
457bp
FPKM:3.89 TPM:2.87
1073 A_ErmoMG_comp169352_c0_seq1
412bp
PREDICTED:_uncharacterized_protein_LOC106116102_[Papilio_xuthus]
FPKM:3.44 TPM:2.53
1074 A_ErmoMG_comp16935_c0_seq1
560bp
FPKM:1.96 TPM:1.44
1075 A_ErmoMG_comp16936_c0_seq1
455bp
PREDICTED:_ubiquitin-like_modifier-activating_enzyme_ATG7_[Amyelois_transitella]
GO:0000422 P autophagy of mitochondrion
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006497 P protein lipidation
GO:0006501 P C-terminal protein lipidation
GO:0006810 P transport
GO:0006914 P autophagy
GO:0006995 P cellular response to nitrogen starvation
GO:0008641 F ubiquitin-like modifier activating enzyme activity
GO:0010150 P leaf senescence
GO:0015031 P protein transport
GO:0016236 P macroautophagy
GO:0019778 F Atg12 activating enzyme activity
GO:0019779 F Atg8 activating enzyme activity
GO:0030163 P protein catabolic process
GO:0032446 P protein modification by small protein conjugation
GO:0034727 P piecemeal microautophagy of the nucleus
GO:0044805 P late nucleophagy
GO:0050832 P defense response to fungus
FPKM:2.97 TPM:2.18
1076 A_ErmoMG_comp16936_c1_seq1
569bp
PREDICTED:_ubiquitin-like_modifier-activating_enzyme_ATG7_[Amyelois_transitella]
GO:0000045 P autophagosome assembly
GO:0000407 C phagophore assembly site
GO:0000422 P autophagy of mitochondrion
GO:0001889 P liver development
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005930 C axoneme
GO:0006497 P protein lipidation
GO:0006501 P C-terminal protein lipidation
GO:0006520 P cellular amino acid metabolic process
GO:0006810 P transport
GO:0006914 P autophagy
GO:0006995 P cellular response to nitrogen starvation
GO:0006996 P organelle organization
GO:0007005 P mitochondrion organization
GO:0007628 P adult walking behavior
GO:0008134 F transcription factor binding
GO:0008641 F ubiquitin-like modifier activating enzyme activity
GO:0009267 P cellular response to starvation
GO:0009791 P post-embryonic development
GO:0010508 P positive regulation of autophagy
GO:0015031 P protein transport
GO:0016236 P macroautophagy
GO:0016239 P positive regulation of macroautophagy
GO:0019725 P cellular homeostasis
GO:0019778 F Atg12 activating enzyme activity
GO:0019779 F Atg8 activating enzyme activity
GO:0021680 P cerebellar Purkinje cell layer development
GO:0021860 P pyramidal neuron development
GO:0021955 P central nervous system neuron axonogenesis
GO:0021987 P cerebral cortex development
GO:0030163 P protein catabolic process
GO:0031175 P neuron projection development
GO:0031396 P regulation of protein ubiquitination
GO:0031401 P positive regulation of protein modification process
GO:0032436 P positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0032446 P protein modification by small protein conjugation
GO:0034614 P cellular response to reactive oxygen species
GO:0034727 P piecemeal microautophagy of the nucleus
GO:0035774 P positive regulation of insulin secretion involved in cellular response to glucose stimulus
GO:0039521 P suppression by virus of host autophagy
GO:0039689 P negative stranded viral RNA replication
GO:0042594 P response to starvation
GO:0042803 F protein homodimerization activity
GO:0043065 P positive regulation of apoptotic process
GO:0043066 P negative regulation of apoptotic process
GO:0044805 P late nucleophagy
GO:0045732 P positive regulation of protein catabolic process
GO:0050765 P negative regulation of phagocytosis
GO:0050877 P nervous system process
GO:0051607 P defense response to virus
GO:0055013 P cardiac muscle cell development
GO:0060284 P regulation of cell development
GO:0060548 P negative regulation of cell death
GO:0061024 P membrane organization
GO:0070257 P positive regulation of mucus secretion
GO:0071455 P cellular response to hyperoxia
GO:0090156 P cellular sphingolipid homeostasis
GO:0090157 P negative regulation of sphingolipid biosynthetic process
GO:1903146 P regulation of autophagy of mitochondrion
GO:1903706 P regulation of hemopoiesis
GO:2000619 P negative regulation of histone H4-K16 acetylation
FPKM:2.26 TPM:1.66
1077 A_ErmoMG_comp16938_c0_seq1
423bp
PREDICTED:_protein_unc-13_homolog_D_isoform_X7_[Bombyx_mori]
FPKM:3.31 TPM:2.43
1078 A_ErmoMG_comp16938_c0_seq2
241bp
PREDICTED:_protein_unc-13_homolog_D_isoform_X6_[Bombyx_mori]
FPKM:1.86 TPM:1.37
1079 A_ErmoMG_comp16939_c0_seq1
340bp
FPKM:3.39 TPM:2.49
1080 A_ErmoMG_comp16940_c0_seq1
483bp
PREDICTED:_peptidyl-prolyl_cis-trans_isomerase_CYP19-2-like_isoform_X4_[Papilio_polytes]
GO:0000413 P protein peptidyl-prolyl isomerization
GO:0003755 F peptidyl-prolyl cis-trans isomerase activity
GO:0005737 C cytoplasm
GO:0006457 P protein folding
GO:0016853 F isomerase activity
GO:0042277 F peptide binding
FPKM:4.25 TPM:3.13
previous next from show/38954

- SilkBase 1999-2023 -