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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
871 A_BomoSK_comp104316_c0_seq1
684bp
FPKM:3.51 TPM:3.53
872 A_BomoSK_comp104317_c0_seq1
1020bp
FPKM:3.71 TPM:3.74
873 A_BomoSK_comp10431_c0_seq1
966bp
 PREDICTED:_E3_ubiquitin-protein_ligase_RNF19B-like_[Bombyx_mori]
FPKM:7.44 TPM:7.48
874 A_BomoSK_comp10432_c0_seq1
2261bp
 hypothetical_protein_KGM_05584_[Danaus_plexippus]
FPKM:2.10 TPM:2.11
875 A_BomoSK_comp10432_c0_seq2
2444bp
 PREDICTED:_uncharacterized_protein_LOC106719512_isoform_X1_[Papilio_machaon]
FPKM:3.20 TPM:3.22
876 A_BomoSK_comp104351_c0_seq1
630bp
 PREDICTED:_uncharacterized_protein_LOC101747117_[Bombyx_mori]
FPKM:5.73 TPM:5.76
877 A_BomoSK_comp10435_c0_seq1
1010bp
 PREDICTED:_mitochondrial_ornithine_transporter_1_isoform_X1_[Bombyx_mori]
GO:0003735 F structural constituent of ribosome
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006412 P translation
GO:0006810 P transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:0.89 TPM:0.89
878 A_BomoSK_comp10435_c0_seq2
1068bp
 PREDICTED:_mitochondrial_ornithine_transporter_2_isoform_X3_[Bombyx_mori]
GO:0000050 P urea cycle
GO:0000064 F L-ornithine transmembrane transporter activity
GO:0000066 P mitochondrial L-ornithine transmembrane transport
GO:0003735 F structural constituent of ribosome
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006412 P translation
GO:0006520 P cellular amino acid metabolic process
GO:0006810 P transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:1903352 P L-ornithine transmembrane transport
FPKM:1.38 TPM:1.39
879 A_BomoSK_comp10435_c0_seq3
1145bp
 PREDICTED:_mitochondrial_ornithine_transporter_1_isoform_X1_[Bombyx_mori]
GO:0000050 P urea cycle
GO:0000064 F L-ornithine transmembrane transporter activity
GO:0000066 P mitochondrial L-ornithine transmembrane transport
GO:0003735 F structural constituent of ribosome
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006412 P translation
GO:0006520 P cellular amino acid metabolic process
GO:0006810 P transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:1903352 P L-ornithine transmembrane transport
FPKM:4.01 TPM:4.04
880 A_BomoSK_comp1043644_c0_seq1
414bp
FPKM:0.50 TPM:0.50
881 A_BomoSK_comp104369_c0_seq1
983bp
 Myelin_transcription_factor_1-like_protein_[Papilio_xuthus]
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0001158 F cis-regulatory region sequence-specific DNA binding
GO:0001228 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0001678 P cellular glucose homeostasis
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0008270 F zinc ion binding
GO:0009791 P post-embryonic development
GO:0010628 P positive regulation of gene expression
GO:0010629 P negative regulation of gene expression
GO:0030154 P cell differentiation
GO:0031018 P endocrine pancreas development
GO:0032350 P regulation of hormone metabolic process
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0060539 P diaphragm development
GO:0061178 P regulation of insulin secretion involved in cellular response to glucose stimulus
FPKM:2.83 TPM:2.84
882 A_BomoSK_comp10437_c0_seq1
1724bp
 PREDICTED:_23_kDa_integral_membrane_protein-like_[Amyelois_transitella]
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:10.02 TPM:10.08
883 A_BomoSK_comp10437_c1_seq1
537bp
FPKM:2.58 TPM:2.59
884 A_BomoSK_comp104380_c0_seq1
586bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_cactin_[Bombyx_mori]
GO:0000398 P mRNA splicing, via spliceosome
GO:0005515 F protein binding
GO:0006952 P defense response
GO:0007165 P signal transduction
GO:0007275 P multicellular organism development
GO:0009950 P dorsal/ventral axis specification
GO:0022008 P neurogenesis
GO:0044822 F RNA binding
GO:0048812 P neuron projection morphogenesis
GO:0071013 C catalytic step 2 spliceosome
FPKM:6.50 TPM:6.54
885 A_BomoSK_comp104381_c0_seq1
1653bp
 PREDICTED:_multiple_inositol_polyphosphate_phosphatase_1-like_[Amyelois_transitella]
GO:0001503 P ossification
GO:0003993 F acid phosphatase activity
GO:0004446 F inositol-hexakisphosphate phosphatase activity
GO:0005783 C endoplasmic reticulum
GO:0005788 C endoplasmic reticulum lumen
GO:0006797 P polyphosphate metabolic process
GO:0008969 F protein histidine phosphatase activity
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0030282 P bone mineralization
GO:0030351 F inositol-1,3,4,5,6-pentakisphosphate 3-phosphatase activity
GO:0034417 F bisphosphoglycerate 3-phosphatase activity
GO:0043647 P inositol phosphate metabolic process
GO:0051717 F inositol-1,3,4,5-tetrakisphosphate 3-phosphatase activity
GO:0052826 F inositol hexakisphosphate 2-phosphatase activity
GO:0070062 C extracellular exosome
FPKM:3.80 TPM:3.82
886 A_BomoSK_comp104389_c0_seq1
586bp
 PREDICTED:_disheveled-associated_activator_of_morphogenesis_1_isoform_X2_[Bombyx_mori]
GO:0001725 C stress fiber
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0016020 C membrane
GO:0016043 P cellular component organization
GO:0017048 F small GTPase binding
GO:0030036 P actin cytoskeleton organization
GO:0042802 F identical protein binding
FPKM:5.09 TPM:5.12
887 A_BomoSK_comp10438_c0_seq1
548bp
FPKM:0.74 TPM:0.74
888 A_BomoSK_comp10438_c0_seq2
891bp
 Uncharacterized_protein_OBRU01_02105_[Operophtera_brumata]
FPKM:6.90 TPM:6.94
889 A_BomoSK_comp104391_c0_seq1
298bp
FPKM:1.51 TPM:1.52
890 A_BomoSK_comp1043_c0_seq1
737bp
 PREDICTED:_ankyrin_repeat_and_SOCS_box_protein_3-like_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005622 C intracellular anatomical structure
GO:0008150 P biological_process
GO:0016567 P protein ubiquitination
GO:0035556 P intracellular signal transduction
FPKM:1.64 TPM:1.65
891 A_BomoSK_comp10440_c0_seq1
1320bp
 PREDICTED:_TBC1_domain_family_member_5_homolog_A-like_[Papilio_polytes]
FPKM:2.72 TPM:2.73
892 A_BomoSK_comp10440_c0_seq2
1445bp
 PREDICTED:_TBC1_domain_family_member_5_homolog_A-like_[Papilio_polytes]
FPKM:3.01 TPM:3.02
893 A_BomoSK_comp10441_c0_seq1
1286bp
 PREDICTED:_major_facilitator_superfamily_domain-containing_protein_8_isoform_X1_[Bombyx_mori]
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0006810 P transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0055085 P transmembrane transport
FPKM:1.93 TPM:1.95
894 A_BomoSK_comp10441_c0_seq2
1253bp
 PREDICTED:_major_facilitator_superfamily_domain-containing_protein_8_isoform_X1_[Bombyx_mori]
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0006810 P transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0055085 P transmembrane transport
FPKM:4.15 TPM:4.17
895 A_BomoSK_comp104429_c0_seq1
921bp
 PREDICTED:_uncharacterized_protein_LOC101744165_[Bombyx_mori]
FPKM:4.52 TPM:4.55
896 A_BomoSK_comp10442_c0_seq1
1521bp
 hypothetical_protein_RR46_08588_[Papilio_xuthus]
FPKM:4.79 TPM:4.82
897 A_BomoSK_comp10442_c0_seq2
1314bp
 hypothetical_protein_RR46_08588_[Papilio_xuthus]
FPKM:1.36 TPM:1.37
898 A_BomoSK_comp104438_c0_seq1
1750bp
 PREDICTED:_uncharacterized_protein_LOC101744353_[Bombyx_mori]
FPKM:4.57 TPM:4.59
899 A_BomoSK_comp10443_c0_seq1
2601bp
 adaptor_protein_complex-1_gamma_subunit_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005802 C trans-Golgi network
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0008565 F obsolete protein transporter activity
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0017137 F small GTPase binding
GO:0019894 F kinesin binding
GO:0030117 C membrane coat
GO:0030131 C clathrin adaptor complex
GO:0030136 C clathrin-coated vesicle
GO:0030665 C clathrin-coated vesicle membrane
GO:0030742 F GTP-dependent protein binding
GO:0031410 C cytoplasmic vesicle
GO:0035646 P endosome to melanosome transport
GO:0043231 C intracellular membrane-bounded organelle
GO:0043323 P positive regulation of natural killer cell degranulation
GO:0045954 P positive regulation of natural killer cell mediated cytotoxicity
GO:0048471 C perinuclear region of cytoplasm
GO:0055037 C recycling endosome
GO:0090160 P Golgi to lysosome transport
FPKM:5.47 TPM:5.50
900 A_BomoSK_comp104441_c0_seq1
1282bp
 PREDICTED:_zinc_finger_and_SCAN_domain-containing_protein_12-like_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
FPKM:3.49 TPM:3.51
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