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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
121 A_BomoSK_comp100513_c0_seq1
402bp
FPKM:5.78 TPM:5.82
122 A_BomoSK_comp10051_c0_seq1
714bp
 PREDICTED:_rab_GTPase-binding_effector_protein_1_isoform_X2_[Bombyx_mori]
GO:0046872 F metal ion binding
FPKM:8.55 TPM:8.60
123 A_BomoSK_comp100524_c0_seq1
1032bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:4.33 TPM:4.35
124 A_BomoSK_comp100526_c0_seq1
896bp
 PREDICTED:_COMM_domain-containing_protein_5-like_[Amyelois_transitella]
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
FPKM:4.13 TPM:4.15
125 A_BomoSK_comp1005282_c0_seq1
203bp
 predicted_protein_[Thalassiosira_pseudonana_CCMP1335]
FPKM:1.90 TPM:1.91
126 A_BomoSK_comp100529_c0_seq1
513bp
FPKM:3.81 TPM:3.83
127 A_BomoSK_comp10053_c0_seq1
1489bp
 non-LTR_retrotransposon_R1Bmks_ORF1_protein_[Bombyx_mori]
FPKM:1.60 TPM:1.61
128 A_BomoSK_comp10054_c0_seq1
278bp
FPKM:13.91 TPM:13.99
129 A_BomoSK_comp100558_c0_seq1
235bp
 nonstructural_protein_2_[Penaeus_monodon_circovirus_VN11]
FPKM:2.06 TPM:2.08
130 A_BomoSK_comp10055_c0_seq1
1264bp
FPKM:4.70 TPM:4.73
131 A_BomoSK_comp100563_c0_seq1
966bp
FPKM:4.12 TPM:4.14
132 A_BomoSK_comp100565_c0_seq1
1132bp
 PREDICTED:_CD151_antigen-like_isoform_X1_[Bombyx_mori]
GO:0005178 F integrin binding
GO:0005515 F protein binding
GO:0005604 C basement membrane
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0005925 C focal adhesion
GO:0007155 P cell adhesion
GO:0007166 P cell surface receptor signaling pathway
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016477 P cell migration
GO:0031581 P hemidesmosome assembly
GO:0042098 P T cell proliferation
FPKM:5.06 TPM:5.09
133 A_BomoSK_comp100568_c0_seq1
777bp
 hypothetical_protein_VHEMI00015_[Torrubiella_hemipterigena]
FPKM:5.44 TPM:5.47
134 A_BomoSK_comp1005695_c0_seq1
351bp
 PREDICTED:_uncharacterized_protein_LOC106129641_[Amyelois_transitella]
GO:0005096 F GTPase activator activity
GO:0005829 C cytosol
GO:0007165 P signal transduction
GO:0021987 P cerebral cortex development
GO:0043547 P positive regulation of GTPase activity
GO:0051056 P regulation of small GTPase mediated signal transduction
FPKM:0.69 TPM:0.69
135 A_BomoSK_comp10056_c0_seq1
1325bp
 PREDICTED:_protein_prune_homolog_2_[Papilio_machaon]
GO:0005737 C cytoplasm
GO:0006915 P apoptotic process
FPKM:2.32 TPM:2.33
136 A_BomoSK_comp10056_c0_seq2
1258bp
 PREDICTED:_protein_prune_homolog_2_[Papilio_machaon]
GO:0005737 C cytoplasm
GO:0006915 P apoptotic process
FPKM:5.99 TPM:6.02
137 A_BomoSK_comp10057_c0_seq1
464bp
 PREDICTED:_phosphatase_and_actin_regulator_4B_[Papilio_polytes]
GO:0003779 F actin binding
GO:0004864 F protein phosphatase inhibitor activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0008157 F protein phosphatase 1 binding
GO:0008599 F protein phosphatase regulator activity
GO:0030054 C cell junction
GO:0031032 P actomyosin structure organization
GO:0031532 P actin cytoskeleton reorganization
GO:0043086 P negative regulation of catalytic activity
GO:0043149 P stress fiber assembly
GO:0045202 C synapse
GO:0050790 P regulation of catalytic activity
FPKM:0.00 TPM:0.00
138 A_BomoSK_comp10057_c0_seq2
655bp
 PREDICTED:_phosphatase_and_actin_regulator_4B_[Bombyx_mori]
GO:0003779 F actin binding
GO:0004864 F protein phosphatase inhibitor activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0008157 F protein phosphatase 1 binding
GO:0008599 F protein phosphatase regulator activity
GO:0030054 C cell junction
GO:0031032 P actomyosin structure organization
GO:0031532 P actin cytoskeleton reorganization
GO:0043086 P negative regulation of catalytic activity
GO:0043149 P stress fiber assembly
GO:0045202 C synapse
GO:0050790 P regulation of catalytic activity
FPKM:0.00 TPM:0.00
139 A_BomoSK_comp10057_c0_seq3
680bp
 PREDICTED:_phosphatase_and_actin_regulator_4B_[Bombyx_mori]
GO:0003779 F actin binding
GO:0004864 F protein phosphatase inhibitor activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0008157 F protein phosphatase 1 binding
GO:0008599 F protein phosphatase regulator activity
GO:0030054 C cell junction
GO:0031032 P actomyosin structure organization
GO:0031532 P actin cytoskeleton reorganization
GO:0043086 P negative regulation of catalytic activity
GO:0043149 P stress fiber assembly
GO:0045202 C synapse
GO:0050790 P regulation of catalytic activity
FPKM:7.67 TPM:7.72
140 A_BomoSK_comp10057_c0_seq4
489bp
 PREDICTED:_phosphatase_and_actin_regulator_4B_[Papilio_polytes]
GO:0003779 F actin binding
GO:0004864 F protein phosphatase inhibitor activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0008157 F protein phosphatase 1 binding
GO:0008599 F protein phosphatase regulator activity
GO:0030054 C cell junction
GO:0031032 P actomyosin structure organization
GO:0031532 P actin cytoskeleton reorganization
GO:0043086 P negative regulation of catalytic activity
GO:0043149 P stress fiber assembly
GO:0045202 C synapse
GO:0050790 P regulation of catalytic activity
FPKM:3.15 TPM:3.17
141 A_BomoSK_comp10058_c0_seq1
788bp
 PREDICTED:_arf-GAP_with_Rho-GAP_domain,_ANK_repeat_and_PH_domain-containing_protein_2_[Bombyx_mori]
FPKM:1.59 TPM:1.60
142 A_BomoSK_comp10058_c1_seq1
488bp
 PREDICTED:_arf-GAP_with_Rho-GAP_domain,_ANK_repeat_and_PH_domain-containing_protein_2_[Bombyx_mori]
FPKM:0.94 TPM:0.94
143 A_BomoSK_comp10058_c2_seq1
698bp
 PREDICTED:_arf-GAP_with_Rho-GAP_domain,_ANK_repeat_and_PH_domain-containing_protein_2_[Bombyx_mori]
FPKM:1.32 TPM:1.33
144 A_BomoSK_comp100596_c0_seq1
882bp
 PREDICTED:_single-stranded_DNA-binding_protein_3_isoform_X1_[Bombyx_mori]
GO:0002244 P hematopoietic progenitor cell differentiation
GO:0003677 F DNA binding
GO:0003697 F single-stranded DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006461 P protein-containing complex assembly
GO:0008284 P positive regulation of cell population proliferation
GO:0021501 P prechordal plate formation
GO:0021547 P midbrain-hindbrain boundary initiation
GO:0043234 C protein-containing complex
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0060322 P head development
GO:0060323 P head morphogenesis
GO:2000744 P positive regulation of anterior head development
FPKM:4.45 TPM:4.48
145 A_BomoSK_comp10059_c0_seq1
1894bp
 PREDICTED:_stress-induced-phosphoprotein_1-like_[Amyelois_transitella]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0051131 P chaperone-mediated protein complex assembly
GO:0051879 F Hsp90 protein binding
GO:0070678 F preprotein binding
FPKM:8.63 TPM:8.68
146 A_BomoSK_comp1005_c0_seq1
676bp
 PREDICTED:_protein_couch_potato_[Bombyx_mori]
FPKM:1.15 TPM:1.16
147 A_BomoSK_comp10060_c0_seq1
1462bp
FPKM:2.56 TPM:2.57
148 A_BomoSK_comp100617_c0_seq1
2366bp
 PREDICTED:_exonuclease_mut-7_homolog_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0006139 P nucleobase-containing compound metabolic process
GO:0008408 F 3'-5' exonuclease activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:3.43 TPM:3.45
149 A_BomoSK_comp10061_c0_seq1
735bp
FPKM:1.23 TPM:1.24
150 A_BomoSK_comp10061_c1_seq1
285bp
FPKM:1.13 TPM:1.14
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