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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1 A_BomoSK_comp0_c0_seq1
349bp
FPKM:1.74 TPM:1.75
2 A_BomoSK_comp0_c1_seq1
366bp
FPKM:0.95 TPM:0.95
3 A_BomoSK_comp100003_c0_seq1
557bp
FPKM:5.79 TPM:5.83
4 A_BomoSK_comp10000_c0_seq1
529bp
 PREDICTED:_TATA_element_modulatory_factor_isoform_X2_[Bombyx_mori]
FPKM:1.97 TPM:1.98
5 A_BomoSK_comp10000_c0_seq2
568bp
 PREDICTED:_TATA_element_modulatory_factor_isoform_X2_[Bombyx_mori]
FPKM:6.52 TPM:6.56
6 A_BomoSK_comp100010_c0_seq1
453bp
 PREDICTED:_telomerase-binding_protein_EST1A_[Bombyx_mori]
FPKM:5.73 TPM:5.77
7 A_BomoSK_comp100019_c0_seq1
1303bp
 hypothetical_protein_KGM_13835_[Danaus_plexippus]
GO:1903955 P positive regulation of protein targeting to mitochondrion
FPKM:4.74 TPM:4.76
8 A_BomoSK_comp10001_c0_seq1
1018bp
FPKM:1.42 TPM:1.43
9 A_BomoSK_comp10001_c1_seq1
206bp
 PREDICTED:_uncharacterized_protein_LOC106719338_isoform_X3_[Papilio_machaon]
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0034451 C centriolar satellite
GO:0036158 P outer dynein arm assembly
GO:0036159 P inner dynein arm assembly
GO:0044458 P motile cilium assembly
GO:0046872 F metal ion binding
FPKM:0.00 TPM:0.00
10 A_BomoSK_comp10002_c0_seq1
687bp
 PREDICTED:_rab11_family-interacting_protein_4_isoform_X3_[Bombyx_mori]
GO:0000910 P cytokinesis
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0006810 P transport
GO:0007049 P cell cycle
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0017137 F small GTPase binding
GO:0030306 F small GTPase binding
GO:0030496 C midbody
GO:0032154 C cleavage furrow
GO:0032456 P endocytic recycling
GO:0042803 F protein homodimerization activity
GO:0043231 C intracellular membrane-bounded organelle
GO:0045171 C intercellular bridge
GO:0046872 F metal ion binding
GO:0051301 P cell division
GO:0051959 F dynein light intermediate chain binding
GO:0055037 C recycling endosome
GO:0055038 C recycling endosome membrane
GO:0061512 P protein localization to cilium
GO:0070164 P negative regulation of adiponectin secretion
FPKM:10.94 TPM:11.01
11 A_BomoSK_comp10002_c0_seq2
395bp
 PREDICTED:_rab11_family-interacting_protein_4_isoform_X3_[Bombyx_mori]
FPKM:0.00 TPM:0.00
12 A_BomoSK_comp10002_c0_seq3
639bp
 PREDICTED:_rab11_family-interacting_protein_4A_isoform_X2_[Bombyx_mori]
GO:0000910 P cytokinesis
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0006810 P transport
GO:0007049 P cell cycle
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0017137 F small GTPase binding
GO:0030306 F small GTPase binding
GO:0030496 C midbody
GO:0032154 C cleavage furrow
GO:0032456 P endocytic recycling
GO:0042803 F protein homodimerization activity
GO:0043231 C intracellular membrane-bounded organelle
GO:0045171 C intercellular bridge
GO:0046872 F metal ion binding
GO:0051301 P cell division
GO:0051959 F dynein light intermediate chain binding
GO:0055037 C recycling endosome
GO:0055038 C recycling endosome membrane
GO:0061512 P protein localization to cilium
GO:0070164 P negative regulation of adiponectin secretion
FPKM:12.95 TPM:13.03
13 A_BomoSK_comp1000307_c0_seq1
210bp
FPKM:1.62 TPM:1.63
14 A_BomoSK_comp10003_c0_seq1
488bp
 putative_f-box_protein_[Danaus_plexippus]
FPKM:3.54 TPM:3.56
15 A_BomoSK_comp10003_c0_seq2
456bp
 putative_f-box_protein_[Danaus_plexippus]
FPKM:0.66 TPM:0.66
16 A_BomoSK_comp10003_c0_seq3
810bp
 PREDICTED:_F-box_only_protein_42_[Amyelois_transitella]
FPKM:4.79 TPM:4.82
17 A_BomoSK_comp10003_c1_seq1
879bp
 PREDICTED:_F-box_only_protein_42_[Amyelois_transitella]
FPKM:4.07 TPM:4.09
18 A_BomoSK_comp100040_c0_seq1
527bp
 hypothetical_protein_[Stigmatella_aurantiaca]
FPKM:3.98 TPM:4.01
19 A_BomoSK_comp10004_c0_seq1
4527bp
 PREDICTED:_uncharacterized_protein_LOC101743416_[Bombyx_mori]
GO:0002119 P nematode larval development
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0007275 P multicellular organism development
GO:0007506 P gonadal mesoderm development
GO:0007548 P sex differentiation
GO:0008134 F transcription factor binding
GO:0008406 P gonad development
GO:0010468 P regulation of gene expression
GO:0017151 F DEAD/H-box RNA helicase binding
GO:0030154 P cell differentiation
GO:0040025 P vulval development
GO:0040035 P hermaphrodite genitalia development
GO:0042802 F identical protein binding
GO:0042826 F histone deacetylase binding
GO:0046872 F metal ion binding
GO:0048599 P oocyte development
FPKM:3.25 TPM:3.27
20 A_BomoSK_comp10005_c0_seq1
2558bp
 hypothetical_protein_KGM_18607_[Danaus_plexippus]
GO:0003674 F molecular_function
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0005770 C late endosome
GO:0006810 P transport
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031902 C late endosome membrane
FPKM:4.98 TPM:5.01
21 A_BomoSK_comp10005_c0_seq2
2599bp
 hypothetical_protein_KGM_18607_[Danaus_plexippus]
GO:0003674 F molecular_function
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0005770 C late endosome
GO:0006810 P transport
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031902 C late endosome membrane
FPKM:0.00 TPM:0.00
22 A_BomoSK_comp10006_c0_seq1
4711bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_chaoptin_[Bombyx_mori]
GO:0005886 C plasma membrane
GO:0007155 P cell adhesion
GO:0007156 P homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007601 P visual perception
GO:0016020 C membrane
GO:0016028 C rhabdomere
GO:0032528 P microvillus organization
GO:0035996 C rhabdomere microvillus
GO:0042051 P compound eye photoreceptor development
GO:0042052 P rhabdomere development
GO:0046658 C anchored component of plasma membrane
GO:0050896 P response to stimulus
FPKM:7.62 TPM:7.67
23 A_BomoSK_comp100078_c0_seq1
949bp
 PREDICTED:_WD_repeat-containing_and_planar_cell_polarity_effector_protein_fritz_homolog_isoform_X2_[Bombyx_mori]
GO:0001736 P establishment of planar polarity
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005929 C cilium
GO:0016020 C membrane
GO:0030030 P cell projection organization
GO:0035320 P imaginal disc-derived wing hair site selection
GO:0042995 C cell projection
FPKM:4.58 TPM:4.61
24 A_BomoSK_comp10007_c0_seq1
359bp
FPKM:1.31 TPM:1.32
25 A_BomoSK_comp10007_c1_seq1
341bp
FPKM:1.46 TPM:1.47
26 A_BomoSK_comp100085_c0_seq1
864bp
FPKM:5.32 TPM:5.35
27 A_BomoSK_comp10008_c0_seq1
422bp
FPKM:1.20 TPM:1.21
28 A_BomoSK_comp10009_c0_seq1
330bp
FPKM:3.15 TPM:3.17
29 A_BomoSK_comp10009_c1_seq1
485bp
 PREDICTED:_probable_protein_phosphatase_2C_21_[Cucumis_melo]
FPKM:2.27 TPM:2.29
30 A_BomoSK_comp1000_c0_seq1
406bp
 phosphoglucomutase,_alpha-D-glucose_phosphate-specific_[Pseudoalteromonas_issachenkonii]
FPKM:1.29 TPM:1.30
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