SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/43914
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
961 A_BomoMG_comp154016_c0_seq1
352bp
 PREDICTED:_BRCA1-associated_protein_homolog_2,_partial_[Papilio_polytes]
GO:0000151 C ubiquitin ligase complex
GO:0000165 P MAPK cascade
GO:0000166 F nucleotide binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0007265 P Ras protein signal transduction
GO:0008139 F nuclear localization sequence binding
GO:0008270 F zinc ion binding
GO:0009968 P negative regulation of signal transduction
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0031965 C nuclear membrane
GO:0042802 F identical protein binding
GO:0043130 F ubiquitin binding
GO:0046872 F metal ion binding
GO:0061630 F ubiquitin protein ligase activity
FPKM:6.72 TPM:5.31
962 A_BomoMG_comp154054_c0_seq1
563bp
FPKM:4.64 TPM:3.67
963 A_BomoMG_comp154087_c0_seq1
320bp
FPKM:4.52 TPM:3.57
964 A_BomoMG_comp154230_c0_seq1
1508bp
FPKM:2.43 TPM:1.92
965 A_BomoMG_comp154262_c0_seq1
707bp
FPKM:4.31 TPM:3.40
966 A_BomoMG_comp154859_c0_seq1
894bp
FPKM:3.33 TPM:2.63
967 A_BomoMG_comp154916_c0_seq1
670bp
FPKM:3.62 TPM:2.86
968 A_BomoMG_comp154924_c0_seq1
1183bp
 PREDICTED:_ATP-dependent_DNA_helicase_Q4_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000405 F bubble DNA binding
GO:0000733 P obsolete DNA strand renaturation
GO:0001501 P skeletal system development
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0006260 P DNA replication
GO:0006284 P base-excision repair
GO:0006302 P double-strand break repair
GO:0006310 P DNA recombination
GO:0008026 F helicase activity
GO:0008270 F zinc ion binding
GO:0008284 P positive regulation of cell population proliferation
GO:0009378 F four-way junction helicase activity
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0032508 P DNA duplex unwinding
GO:0036310 F ATP-dependent DNA/DNA annealing activity
GO:0043140 F 3'-5' DNA helicase activity
GO:0043473 P pigmentation
GO:0045875 P negative regulation of sister chromatid cohesion
GO:0046872 F metal ion binding
GO:0048705 P skeletal system morphogenesis
FPKM:3.08 TPM:2.43
969 A_BomoMG_comp154946_c0_seq1
865bp
 Uncharacterized_protein_OBRU01_02105_[Operophtera_brumata]
FPKM:3.88 TPM:3.06
970 A_BomoMG_comp155033_c0_seq1
301bp
 hypothetical_protein_[Streptomyces_caatingaensis]
FPKM:5.81 TPM:4.59
971 A_BomoMG_comp155125_c0_seq1
506bp
 PREDICTED:_mitoferrin-1-like_[Plutella_xylostella]
GO:0003735 F structural constituent of ribosome
GO:0005381 F iron ion transmembrane transporter activity
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006412 P translation
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006839 P mitochondrial transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0031966 C mitochondrial membrane
GO:0034755 P iron ion transmembrane transport
GO:0048250 P iron import into the mitochondrion
GO:0048515 P spermatid differentiation
GO:0055072 P iron ion homeostasis
GO:0055085 P transmembrane transport
GO:0060586 P multicellular organismal iron ion homeostasis
FPKM:3.42 TPM:2.70
972 A_BomoMG_comp155131_c0_seq1
349bp
 putative_importin_[Danaus_plexippus]
GO:0005049 F nuclear export signal receptor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006606 P protein import into nucleus
GO:0006611 P protein export from nucleus
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0007589 P body fluid secretion
GO:0008536 F small GTPase binding
GO:0015031 P protein transport
FPKM:5.16 TPM:4.08
973 A_BomoMG_comp155145_c0_seq1
699bp
FPKM:3.57 TPM:2.82
974 A_BomoMG_comp155146_c0_seq1
761bp
FPKM:3.45 TPM:2.72
975 A_BomoMG_comp155147_c0_seq1
658bp
FPKM:5.23 TPM:4.13
976 A_BomoMG_comp155159_c0_seq1
2265bp
FPKM:3.33 TPM:2.63
977 A_BomoMG_comp155202_c0_seq1
342bp
 putative_BTB/POZ_domain-containing_protein_7_[Danaus_plexippus]
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0007275 P multicellular organism development
GO:0060693 P regulation of branching involved in salivary gland morphogenesis
FPKM:6.88 TPM:5.43
978 A_BomoMG_comp155219_c0_seq1
786bp
FPKM:4.18 TPM:3.30
979 A_BomoMG_comp155221_c0_seq1
1152bp
FPKM:3.88 TPM:3.06
980 A_BomoMG_comp155234_c0_seq1
1259bp
 PREDICTED:_uncharacterized_protein_LOC106129825_[Amyelois_transitella]
FPKM:3.74 TPM:2.95
981 A_BomoMG_comp155236_c0_seq1
1547bp
 PREDICTED:_uncharacterized_protein_LOC101736037_isoform_X1_[Bombyx_mori]
FPKM:2.62 TPM:2.07
982 A_BomoMG_comp155302_c0_seq1
225bp
 hypothetical_protein_[Dyadobacter_beijingensis]
FPKM:4.76 TPM:3.76
983 A_BomoMG_comp155312_c0_seq1
211bp
FPKM:3.96 TPM:3.13
984 A_BomoMG_comp155313_c0_seq1
229bp
FPKM:8.62 TPM:6.81
985 A_BomoMG_comp155331_c0_seq1
327bp
 hypothetical_protein_AOL_s00210g36_[Arthrobotrys_oligospora_ATCC_24927]
FPKM:3.10 TPM:2.45
986 A_BomoMG_comp155334_c0_seq1
277bp
 uracil-DNA_glycosylase_[Mycoplasma_leonicaptivi]
FPKM:4.31 TPM:3.40
987 A_BomoMG_comp155407_c0_seq1
317bp
FPKM:6.14 TPM:4.85
988 A_BomoMG_comp155472_c0_seq1
1459bp
 PREDICTED:_nuclear_receptor_coactivator_6-like_[Bombyx_mori]
GO:0001541 P ovarian follicle development
GO:0002793 P positive regulation of peptide secretion
GO:0003682 F chromatin binding
GO:0003713 F transcription coactivator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005667 C transcription regulator complex
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006351 P transcription, DNA-templated
GO:0006352 P DNA-templated transcription, initiation
GO:0006355 P regulation of transcription, DNA-templated
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0006974 P cellular response to DNA damage stimulus
GO:0007420 P brain development
GO:0007507 P heart development
GO:0009725 P response to hormone
GO:0016922 F nuclear receptor binding
GO:0019899 F enzyme binding
GO:0019904 F protein domain specific binding
GO:0030099 P myeloid cell differentiation
GO:0030331 F estrogen receptor binding
GO:0030374 F nuclear receptor coactivator activity
GO:0030520 P intracellular estrogen receptor signaling pathway
GO:0035097 C histone methyltransferase complex
GO:0035257 F nuclear receptor binding
GO:0035259 F glucocorticoid receptor binding
GO:0035774 P positive regulation of insulin secretion involved in cellular response to glucose stimulus
GO:0042803 F protein homodimerization activity
GO:0042921 P glucocorticoid receptor signaling pathway
GO:0042974 F retinoic acid receptor binding
GO:0042975 F peroxisome proliferator activated receptor binding
GO:0043231 C intracellular membrane-bounded organelle
GO:0043234 C protein-containing complex
GO:0044255 P cellular lipid metabolic process
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046965 F retinoid X receptor binding
GO:0046966 F thyroid hormone receptor binding
FPKM:3.51 TPM:2.77
989 A_BomoMG_comp155493_c0_seq1
716bp
FPKM:3.59 TPM:2.84
990 A_BomoMG_comp155494_c0_seq1
1905bp
 PREDICTED:_cyclin-C_[Bombyx_mori]
GO:0000307 C cyclin-dependent protein kinase holoenzyme complex
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016538 F cyclin-dependent protein serine/threonine kinase regulator activity
GO:0045737 P positive regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:1901409 P positive regulation of phosphorylation of RNA polymerase II C-terminal domain
FPKM:2.57 TPM:2.03
previous next from show/43914

- SilkBase 1999-2023 -