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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
781 A_BomoMG_comp145005_c0_seq1
418bp
FPKM:3.57 TPM:2.82
782 A_BomoMG_comp145238_c0_seq1
595bp
 PREDICTED:_uncharacterized_protein_LOC107071792_[Polistes_dominula]
GO:0003677 F DNA binding
GO:0005634 C nucleus
FPKM:2.65 TPM:2.10
783 A_BomoMG_comp145248_c0_seq1
289bp
FPKM:7.88 TPM:6.23
784 A_BomoMG_comp145374_c0_seq1
461bp
FPKM:4.50 TPM:3.55
785 A_BomoMG_comp145663_c0_seq1
464bp
FPKM:3.52 TPM:2.78
786 A_BomoMG_comp145712_c0_seq1
935bp
 Lix1_protein_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005737 C cytoplasm
GO:0008150 P biological_process
GO:0097352 P autophagosome maturation
FPKM:4.62 TPM:3.65
787 A_BomoMG_comp145731_c0_seq1
310bp
FPKM:6.17 TPM:4.88
788 A_BomoMG_comp145827_c0_seq1
342bp
FPKM:4.39 TPM:3.47
789 A_BomoMG_comp146065_c0_seq1
1005bp
FPKM:3.37 TPM:2.67
790 A_BomoMG_comp146147_c0_seq1
1166bp
 PREDICTED:_ATP_synthase_subunit_s-like_protein_[Papilio_polytes]
FPKM:3.68 TPM:2.91
791 A_BomoMG_comp14625_c0_seq1
250bp
 hypothetical_protein_KGM_04941_[Danaus_plexippus]
FPKM:0.36 TPM:0.29
792 A_BomoMG_comp146337_c0_seq1
580bp
FPKM:5.49 TPM:4.34
793 A_BomoMG_comp146395_c0_seq1
960bp
 PREDICTED:_photoreceptor-specific_nuclear_receptor-like,_partial_[Biomphalaria_glabrata]
FPKM:3.61 TPM:2.85
794 A_BomoMG_comp146440_c0_seq1
711bp
FPKM:4.81 TPM:3.80
795 A_BomoMG_comp146475_c0_seq1
1087bp
FPKM:3.51 TPM:2.78
796 A_BomoMG_comp146477_c0_seq1
828bp
 hypothetical_protein_[Streptococcus_suis]
FPKM:4.20 TPM:3.32
797 A_BomoMG_comp146487_c0_seq1
492bp
 PREDICTED:_HEAT_repeat-containing_protein_5B_[Papilio_xuthus]
FPKM:4.74 TPM:3.75
798 A_BomoMG_comp146489_c0_seq1
1899bp
 PREDICTED:_mothers_against_decapentaplegic_homolog_3_[Papilio_polytes]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000790 C chromatin
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000983 F RNA polymerase II general transcription initiation factor activity
GO:0000987 F cis-regulatory region sequence-specific DNA binding
GO:0000988 F obsolete transcription factor activity, protein binding
GO:0001102 F RNA polymerase II-specific DNA-binding transcription factor binding
GO:0001501 P skeletal system development
GO:0001649 P osteoblast differentiation
GO:0001657 P ureteric bud development
GO:0001666 P response to hypoxia
GO:0001707 P mesoderm formation
GO:0001756 P somitogenesis
GO:0001889 P liver development
GO:0001933 P negative regulation of protein phosphorylation
GO:0001947 P heart looping
GO:0002076 P osteoblast development
GO:0002520 P immune system development
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003690 F double-stranded DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005160 F transforming growth factor beta receptor binding
GO:0005518 F collagen binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005637 C nuclear inner membrane
GO:0005654 C nucleoplasm
GO:0005667 C transcription regulator complex
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006810 P transport
GO:0006919 P activation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0006955 P immune response
GO:0007050 P regulation of cell cycle
GO:0007179 P transforming growth factor beta receptor signaling pathway
GO:0007183 P SMAD protein complex assembly
GO:0007369 P gastrulation
GO:0007492 P endoderm development
GO:0008013 F beta-catenin binding
GO:0008134 F transcription factor binding
GO:0008270 F zinc ion binding
GO:0009880 P embryonic pattern specification
GO:0010628 P positive regulation of gene expression
GO:0010718 P positive regulation of epithelial to mesenchymal transition
GO:0016202 P regulation of striated muscle tissue development
GO:0017015 P regulation of transforming growth factor beta receptor signaling pathway
GO:0019049 P mitigation of host defenses by virus
GO:0019901 F protein kinase binding
GO:0019902 F phosphatase binding
GO:0030308 P negative regulation of cell growth
GO:0030618 F obsolete transforming growth factor beta receptor, pathway-specific cytoplasmic mediator activity
GO:0030878 P thyroid gland development
GO:0031490 F chromatin DNA binding
GO:0031625 F ubiquitin protein ligase binding
GO:0032332 P positive regulation of chondrocyte differentiation
GO:0032909 P regulation of transforming growth factor beta2 production
GO:0032924 P activin receptor signaling pathway
GO:0033689 P negative regulation of osteoblast proliferation
GO:0035413 P positive regulation of canonical Wnt signaling pathway
GO:0035556 P intracellular signal transduction
GO:0038092 P nodal signaling pathway
GO:0042110 P T cell activation
GO:0042177 P negative regulation of protein catabolic process
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0042993 P obsolete positive regulation of transcription factor import into nucleus
GO:0043130 F ubiquitin binding
GO:0043235 C receptor complex
GO:0043425 F bHLH transcription factor binding
GO:0043565 F sequence-specific DNA binding
GO:0044212 F transcription cis-regulatory region binding
GO:0045216 P cell-cell junction organization
GO:0045599 P negative regulation of fat cell differentiation
GO:0045668 P negative regulation of osteoblast differentiation
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045930 P negative regulation of mitotic cell cycle
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0046982 F protein heterodimerization activity
GO:0048340 P paraxial mesoderm morphogenesis
GO:0048589 P developmental growth
GO:0048617 P embryonic foregut morphogenesis
GO:0048701 P embryonic cranial skeleton morphogenesis
GO:0050678 P regulation of epithelial cell proliferation
GO:0050728 P negative regulation of inflammatory response
GO:0050776 P regulation of immune response
GO:0050821 P protein stabilization
GO:0051098 P regulation of binding
GO:0060039 P pericardium development
GO:0060395 P SMAD protein signal transduction
GO:0061045 P negative regulation of wound healing
GO:0070306 P lens fiber cell differentiation
GO:0070410 F co-SMAD binding
GO:0070412 F R-SMAD binding
GO:0071141 C SMAD protein complex
GO:0071144 C heteromeric SMAD protein complex
GO:0090263 P positive regulation of canonical Wnt signaling pathway
GO:0097191 P extrinsic apoptotic signaling pathway
GO:1901203 P positive regulation of extracellular matrix assembly
FPKM:3.49 TPM:2.76
799 A_BomoMG_comp146563_c0_seq1
416bp
FPKM:5.68 TPM:4.49
800 A_BomoMG_comp146592_c0_seq1
417bp
FPKM:4.68 TPM:3.70
801 A_BomoMG_comp146598_c0_seq1
329bp
FPKM:3.68 TPM:2.91
802 A_BomoMG_comp146605_c0_seq1
335bp
FPKM:3.37 TPM:2.66
803 A_BomoMG_comp146618_c0_seq1
810bp
FPKM:3.14 TPM:2.48
804 A_BomoMG_comp146626_c0_seq1
1315bp
 hypothetical_protein_KGM_03390_[Danaus_plexippus]
GO:0001104 F transcription coregulator activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0016592 C mediator complex
FPKM:3.91 TPM:3.09
805 A_BomoMG_comp146646_c0_seq1
388bp
 hypothetical_protein_[Vibrio_coralliilyticus]
FPKM:3.71 TPM:2.93
806 A_BomoMG_comp146666_c0_seq1
228bp
FPKM:4.59 TPM:3.63
807 A_BomoMG_comp146680_c0_seq1
495bp
 LSM_Sm-like_protein_family_member_[Bombyx_mori]
GO:0000398 P mRNA splicing, via spliceosome
GO:0000932 C P-body
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005688 C U6 snRNP
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0030529 C ribonucleoprotein complex
GO:0030629 F U6 snRNA 3'-end binding
GO:0033962 P P-body assembly
GO:0044822 F RNA binding
GO:0046540 C U4/U6 x U5 tri-snRNP complex
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
GO:1990726 C Lsm1-7-Pat1 complex
FPKM:4.27 TPM:3.38
808 A_BomoMG_comp146680_c0_seq2
495bp
 LSM_Sm-like_protein_family_member_[Bombyx_mori]
GO:0000398 P mRNA splicing, via spliceosome
GO:0000932 C P-body
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005688 C U6 snRNP
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0030529 C ribonucleoprotein complex
GO:0030629 F U6 snRNA 3'-end binding
GO:0033962 P P-body assembly
GO:0044822 F RNA binding
GO:0046540 C U4/U6 x U5 tri-snRNP complex
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
GO:1990726 C Lsm1-7-Pat1 complex
FPKM:0.00 TPM:0.00
809 A_BomoMG_comp146702_c0_seq1
217bp
FPKM:4.76 TPM:3.76
810 A_BomoMG_comp146705_c0_seq1
390bp
FPKM:2.60 TPM:2.06
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