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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
811 A_BomoMG_comp146727_c0_seq1
1956bp
 PREDICTED:_solute_carrier_family_25_member_40-like_isoform_X1_[Bombyx_mori]
GO:0003735 F structural constituent of ribosome
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006412 P translation
GO:0006810 P transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0055085 P transmembrane transport
FPKM:4.55 TPM:3.60
812 A_BomoMG_comp146775_c0_seq1
370bp
 repressor_[Proteus_vulgaris]
FPKM:7.01 TPM:5.54
813 A_BomoMG_comp146790_c0_seq1
444bp
FPKM:5.76 TPM:4.55
814 A_BomoMG_comp146796_c0_seq1
255bp
FPKM:6.91 TPM:5.46
815 A_BomoMG_comp146797_c0_seq1
893bp
 RRP15-like_protein_[Operophtera_brumata]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
FPKM:4.28 TPM:3.38
816 A_BomoMG_comp146810_c0_seq1
1158bp
 PREDICTED:_uncharacterized_protein_LOC106134463_[Amyelois_transitella]
FPKM:3.89 TPM:3.07
817 A_BomoMG_comp146822_c0_seq1
472bp
FPKM:4.80 TPM:3.80
818 A_BomoMG_comp146851_c0_seq1
475bp
FPKM:5.21 TPM:4.12
819 A_BomoMG_comp146883_c0_seq1
1006bp
 PREDICTED:_uncharacterized_protein_LOC106712680_[Papilio_machaon]
FPKM:3.80 TPM:3.00
820 A_BomoMG_comp146908_c0_seq1
733bp
 hypothetical_protein_[Bombyx_mori]
FPKM:3.48 TPM:2.75
821 A_BomoMG_comp146917_c0_seq1
797bp
 PREDICTED:_uncharacterized_protein_LOC105386439_[Plutella_xylostella]
GO:0070301 P cellular response to hydrogen peroxide
FPKM:4.11 TPM:3.25
822 A_BomoMG_comp146941_c0_seq1
430bp
 Exocyst_complex_component_7_[Papilio_xuthus]
GO:0000145 C exocyst
GO:0005546 F phosphatidylinositol-4,5-bisphosphate binding
GO:0006810 P transport
GO:0006887 P exocytosis
GO:0007269 P neurotransmitter secretion
GO:0008013 F beta-catenin binding
GO:0015031 P protein transport
GO:0016080 P synaptic vesicle targeting
GO:0016081 P synaptic vesicle docking
GO:0016192 P vesicle-mediated transport
GO:0098793 C presynapse
FPKM:5.26 TPM:4.15
823 A_BomoMG_comp146943_c0_seq1
295bp
FPKM:2.52 TPM:1.99
824 A_BomoMG_comp146957_c0_seq1
615bp
 Histone-lysine_N-methyltransferase_SETMAR,_partial_[Habropoda_laboriosa]
GO:0000014 F single-stranded DNA endodeoxyribonuclease activity
GO:0000729 P DNA double-strand break processing
GO:0000737 P DNA catabolic process, endonucleolytic
GO:0000793 C condensed chromosome
GO:0003677 F DNA binding
GO:0003690 F double-stranded DNA binding
GO:0003697 F single-stranded DNA binding
GO:0003824 F catalytic activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006281 P DNA repair
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006974 P cellular response to DNA damage stimulus
GO:0008152 P metabolic process
GO:0008168 F methyltransferase activity
GO:0008270 F zinc ion binding
GO:0008283 P cell population proliferation
GO:0010452 P histone H3-K36 methylation
GO:0015074 P DNA integration
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0016787 F hydrolase activity
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0031297 P replication fork processing
GO:0032259 P methylation
GO:0034968 P histone lysine methylation
GO:0035861 C site of double-strand break
GO:0042800 F histone methyltransferase activity (H3-K4 specific)
GO:0042803 F protein homodimerization activity
GO:0043566 F DNA binding
GO:0044547 F DNA topoisomerase binding
GO:0044774 P mitotic DNA integrity checkpoint signaling
GO:0046872 F metal ion binding
GO:0046975 F histone methyltransferase activity (H3-K36 specific)
GO:0051568 P histone H3-K4 methylation
GO:0071157 P regulation of cell cycle
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0097676 P histone H3-K36 dimethylation
GO:2000373 P positive regulation of DNA topoisomerase (ATP-hydrolyzing) activity
GO:2001034 P positive regulation of double-strand break repair via nonhomologous end joining
GO:2001251 P negative regulation of chromosome organization
FPKM:4.52 TPM:3.57
825 A_BomoMG_comp146968_c0_seq1
589bp
FPKM:2.86 TPM:2.26
826 A_BomoMG_comp146971_c0_seq1
221bp
 AMP-dependent_synthetase_[Phenylobacterium_zucineum]
FPKM:2.51 TPM:1.98
827 A_BomoMG_comp146972_c0_seq1
517bp
 hypothetical_protein_KGM_08958_[Danaus_plexippus]
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
FPKM:5.52 TPM:4.36
828 A_BomoMG_comp147019_c0_seq1
927bp
FPKM:4.23 TPM:3.35
829 A_BomoMG_comp147047_c0_seq1
579bp
 U6_snRNA-associated_Sm-like_protein_LSm4_[Operophtera_brumata]
GO:0000245 P spliceosomal complex assembly
GO:0000387 P spliceosomal snRNP assembly
GO:0000932 C P-body
GO:0000956 P nuclear-transcribed mRNA catabolic process
GO:0002230 P positive regulation of defense response to virus by host
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005688 C U6 snRNP
GO:0005737 C cytoplasm
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0017070 F U6 snRNA binding
GO:0030529 C ribonucleoprotein complex
GO:0033962 P P-body assembly
GO:0044822 F RNA binding
GO:0097526 C spliceosomal tri-snRNP complex
GO:0098779 P positive regulation of mitophagy in response to mitochondrial depolarization
GO:0098792 P xenophagy
FPKM:5.16 TPM:4.08
830 A_BomoMG_comp1470_c0_seq1
353bp
FPKM:0.90 TPM:0.71
831 A_BomoMG_comp147102_c0_seq1
231bp
FPKM:3.99 TPM:3.15
832 A_BomoMG_comp147103_c0_seq1
303bp
FPKM:3.58 TPM:2.83
833 A_BomoMG_comp147117_c0_seq1
412bp
 PREDICTED:_TATA-binding_protein-associated_factor_172_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0035562 P negative regulation of chromatin binding
GO:0043231 C intracellular membrane-bounded organelle
GO:0045892 P negative regulation of transcription, DNA-templated
FPKM:0.00 TPM:0.00
834 A_BomoMG_comp147117_c0_seq2
412bp
 PREDICTED:_TATA-binding_protein-associated_factor_172_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0035562 P negative regulation of chromatin binding
GO:0043231 C intracellular membrane-bounded organelle
GO:0045892 P negative regulation of transcription, DNA-templated
FPKM:6.88 TPM:5.43
835 A_BomoMG_comp147128_c0_seq1
528bp
 phosphomannomutase/phosphoglucomutase_[Salinispora_tropica]
FPKM:3.22 TPM:2.54
836 A_BomoMG_comp147247_c0_seq1
1820bp
 PREDICTED:_2',5'-phosphodiesterase_12_[Amyelois_transitella]
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0004535 F poly(A)-specific ribonuclease activity
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006397 P mRNA processing
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
FPKM:2.55 TPM:2.02
837 A_BomoMG_comp147294_c0_seq1
553bp
FPKM:4.03 TPM:3.18
838 A_BomoMG_comp147408_c0_seq1
624bp
FPKM:2.57 TPM:2.03
839 A_BomoMG_comp147417_c0_seq1
558bp
FPKM:3.62 TPM:2.86
840 A_BomoMG_comp147533_c0_seq1
630bp
 endonuclease_and_reverse_transcriptase-like_protein_[Bombyx_mori]
FPKM:3.00 TPM:2.37
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