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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
541 A_BomoMG_comp133143_c0_seq1
956bp
 PREDICTED:_mediator_of_RNA_polymerase_II_transcription_subunit_6_isoform_X1_[Bombyx_mori]
GO:0001104 F transcription coregulator activity
GO:0001128 F obsolete RNA polymerase II transcription coactivator activity involved in preinitiation complex assembly
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0016592 C mediator complex
GO:0051123 P RNA polymerase II preinitiation complex assembly
GO:0070847 C core mediator complex
FPKM:4.54 TPM:3.59
542 A_BomoMG_comp133168_c0_seq1
296bp
FPKM:3.75 TPM:2.97
543 A_BomoMG_comp133174_c0_seq1
225bp
 Uncharacterised_protein_[Vibrio_cholerae]
FPKM:7.62 TPM:6.02
544 A_BomoMG_comp133216_c0_seq1
423bp
FPKM:6.47 TPM:5.11
545 A_BomoMG_comp133219_c0_seq1
2207bp
 PREDICTED:_cycle_like_factor_b_isoform_X2_[Bombyx_mori]
GO:0000060 P obsolete protein import into nucleus, translocation
GO:0000976 F transcription cis-regulatory region binding
GO:0000982 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0001046 F core promoter sequence-specific DNA binding
GO:0001047 F core promoter sequence-specific DNA binding
GO:0001190 F obsolete transcriptional activator activity, RNA polymerase II transcription factor binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005667 C transcription regulator complex
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0007283 P spermatogenesis
GO:0007623 P circadian rhythm
GO:0016604 C nuclear body
GO:0016605 C PML body
GO:0017162 F aryl hydrocarbon receptor binding
GO:0032007 P negative regulation of TOR signaling
GO:0032922 P circadian regulation of gene expression
GO:0033391 C chromatoid body
GO:0042176 P regulation of protein catabolic process
GO:0042753 P positive regulation of circadian rhythm
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0043231 C intracellular membrane-bounded organelle
GO:0043425 F bHLH transcription factor binding
GO:0043565 F sequence-specific DNA binding
GO:0045599 P negative regulation of fat cell differentiation
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046982 F protein heterodimerization activity
GO:0046983 F protein dimerization activity
GO:0048511 P rhythmic process
GO:0050767 P regulation of neurogenesis
GO:0050796 P regulation of insulin secretion
GO:0051726 P regulation of cell cycle
GO:0051775 P response to redox state
GO:0051879 F Hsp90 protein binding
GO:0060137 P maternal process involved in parturition
GO:0070491 F DNA-binding transcription factor binding
GO:0070888 F E-box binding
GO:0090263 P positive regulation of canonical Wnt signaling pathway
GO:0090403 P oxidative stress-induced premature senescence
GO:2000074 P regulation of type B pancreatic cell development
GO:2000323 P negative regulation of glucocorticoid receptor signaling pathway
GO:2000772 P regulation of cellular senescence
GO:2001016 P positive regulation of skeletal muscle cell differentiation
FPKM:3.26 TPM:2.57
546 A_BomoMG_comp133293_c0_seq1
260bp
FPKM:3.63 TPM:2.87
547 A_BomoMG_comp133324_c0_seq1
230bp
FPKM:11.21 TPM:8.86
548 A_BomoMG_comp133354_c0_seq1
508bp
FPKM:6.28 TPM:4.96
549 A_BomoMG_comp133380_c0_seq1
604bp
FPKM:5.77 TPM:4.56
550 A_BomoMG_comp133418_c0_seq1
3297bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_uncharacterized_protein_KIAA1109_[Bombyx_mori]
GO:0001558 P regulation of cell growth
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030856 P regulation of epithelial cell differentiation
FPKM:3.71 TPM:2.93
551 A_BomoMG_comp133480_c0_seq1
322bp
FPKM:5.11 TPM:4.04
552 A_BomoMG_comp133552_c0_seq1
791bp
FPKM:5.07 TPM:4.01
553 A_BomoMG_comp133576_c0_seq1
437bp
FPKM:3.72 TPM:2.94
554 A_BomoMG_comp133613_c0_seq1
345bp
 hypothetical_protein_T11_1115_[Trichinella_zimbabwensis]
FPKM:6.96 TPM:5.50
555 A_BomoMG_comp133727_c0_seq1
1268bp
 AF361483_1_chymotrypsin_inhibitor_CI-8A_[Bombyx_mori]
GO:0004867 F serine-type endopeptidase inhibitor activity
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0010466 P negative regulation of peptidase activity
GO:0010951 P negative regulation of endopeptidase activity
GO:0030414 F peptidase inhibitor activity
FPKM:3.97 TPM:3.14
556 A_BomoMG_comp133900_c0_seq1
855bp
 PREDICTED:_phosphatidylinositol_N-acetylglucosaminyltransferase_subunit_P_[Papilio_xuthus]
GO:0006506 P GPI anchor biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0017176 F phosphatidylinositol N-acetylglucosaminyltransferase activity
FPKM:5.66 TPM:4.47
557 A_BomoMG_comp133921_c0_seq1
1048bp
 PREDICTED:_enhancer_of_mRNA-decapping_protein_3,_partial_[Bombyx_mori]
GO:0000932 C P-body
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005737 C cytoplasm
GO:0031087 P deadenylation-independent decapping of nuclear-transcribed mRNA
GO:0033962 P P-body assembly
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
GO:1990174 F phosphodiesterase decapping endonuclease activity
FPKM:3.29 TPM:2.60
558 A_BomoMG_comp133960_c0_seq1
209bp
 dihydroorotase_[Calyptogena_okutanii_thioautotrophic_gill_symbiont]
FPKM:8.90 TPM:7.03
559 A_BomoMG_comp133986_c0_seq1
252bp
FPKM:3.91 TPM:3.09
560 A_BomoMG_comp134061_c0_seq1
1934bp
FPKM:3.86 TPM:3.05
561 A_BomoMG_comp134108_c0_seq1
310bp
 Transmembrane_protein_131_[Papilio_machaon]
FPKM:10.06 TPM:7.95
562 A_BomoMG_comp134138_c0_seq1
497bp
FPKM:7.22 TPM:5.71
563 A_BomoMG_comp134209_c0_seq1
215bp
 hypothetical_protein_[Paenibacillus_sp._Soil766]
FPKM:8.16 TPM:6.45
564 A_BomoMG_comp134322_c0_seq1
819bp
FPKM:3.31 TPM:2.62
565 A_BomoMG_comp134359_c0_seq1
313bp
 Ral_GTPase-activating_protein_subunit_beta_[Papilio_machaon]
FPKM:8.31 TPM:6.56
566 A_BomoMG_comp1343_c0_seq1
214bp
FPKM:1.10 TPM:0.87
567 A_BomoMG_comp134587_c0_seq1
988bp
FPKM:5.16 TPM:4.08
568 A_BomoMG_comp134617_c0_seq1
388bp
FPKM:4.32 TPM:3.42
569 A_BomoMG_comp134670_c0_seq1
568bp
 PREDICTED:_WD_repeat-containing_protein_44_[Bombyx_mori]
FPKM:4.85 TPM:3.83
570 A_BomoMG_comp134688_c0_seq1
378bp
FPKM:3.22 TPM:2.55
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