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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
3031 A_BomoMG_comp18657_c1_seq1
455bp
 PREDICTED:_polyribonucleotide_nucleotidyltransferase_1,_mitochondrial-like_[Plutella_xylostella]
GO:0000175 F 3'-5'-exoribonuclease activity
GO:0000957 P mitochondrial RNA catabolic process
GO:0000958 P mitochondrial mRNA catabolic process
GO:0000962 P positive regulation of mitochondrial RNA catabolic process
GO:0000964 P mitochondrial RNA 5'-end processing
GO:0000965 P mitochondrial RNA 3'-end processing
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0004654 F polyribonucleotide nucleotidyltransferase activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005758 C mitochondrial intermembrane space
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0006401 P RNA catabolic process
GO:0006402 P mRNA catabolic process
GO:0006810 P transport
GO:0008266 F poly(U) RNA binding
GO:0016020 C membrane
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0034046 F poly(G) binding
GO:0034599 P cellular response to oxidative stress
GO:0035198 F miRNA binding
GO:0035458 P cellular response to interferon-beta
GO:0035927 P RNA import into mitochondrion
GO:0035928 P rRNA import into mitochondrion
GO:0043457 P regulation of cellular respiration
GO:0043631 P RNA polyadenylation
GO:0044822 F RNA binding
GO:0045025 C mitochondrial degradosome
GO:0045926 P negative regulation of growth
GO:0051260 P protein homooligomerization
GO:0061014 P positive regulation of mRNA catabolic process
GO:0070207 P protein homotrimerization
GO:0070584 P mitochondrion morphogenesis
GO:0071042 P nuclear polyadenylation-dependent mRNA catabolic process
GO:0071850 P regulation of cell cycle
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
GO:0097222 P mitochondrial mRNA polyadenylation
GO:2000627 P positive regulation of miRNA catabolic process
GO:2000772 P regulation of cellular senescence
FPKM:1.93 TPM:1.53
3032 A_BomoMG_comp186587_c0_seq1
1189bp
FPKM:2.96 TPM:2.33
3033 A_BomoMG_comp18658_c0_seq1
477bp
FPKM:1.46 TPM:1.16
3034 A_BomoMG_comp186595_c0_seq1
272bp
 NAD+_synthase_[Phaeobacter_sp._CECT_7735]
FPKM:7.46 TPM:5.90
3035 A_BomoMG_comp18659_c0_seq1
277bp
 PREDICTED:_uncharacterized_protein_LOC101742325_[Bombyx_mori]
FPKM:4.31 TPM:3.40
3036 A_BomoMG_comp18659_c1_seq1
263bp
 PREDICTED:_uncharacterized_protein_LOC101742325_[Bombyx_mori]
FPKM:2.57 TPM:2.03
3037 A_BomoMG_comp186608_c0_seq1
854bp
 PREDICTED:_ribonuclease_H2_subunit_B_[Papilio_xuthus]
GO:0005634 C nucleus
GO:0006401 P RNA catabolic process
GO:0032299 C ribonuclease H2 complex
FPKM:2.52 TPM:1.99
3038 A_BomoMG_comp18662_c0_seq1
361bp
 PREDICTED:_centrosomal_protein_of_164_kDa_isoform_X2_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006351 P transcription, DNA-templated
GO:0006354 P DNA-templated transcription, elongation
GO:0006355 P regulation of transcription, DNA-templated
GO:0008168 F methyltransferase activity
GO:0010452 P histone H3-K36 methylation
GO:0016740 F transferase activity
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0032259 P methylation
GO:0034968 P histone lysine methylation
GO:0046975 F histone methyltransferase activity (H3-K36 specific)
FPKM:3.13 TPM:2.47
3039 A_BomoMG_comp18662_c1_seq1
267bp
 PREDICTED:_centrosomal_protein_of_164_kDa_isoform_X3_[Bombyx_mori]
GO:0000086 P G2/M transition of mitotic cell cycle
GO:0005515 F protein binding
GO:0005615 C extracellular space
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005814 C centriole
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0030030 P cell projection organization
GO:0042384 P cilium assembly
GO:0051301 P cell division
GO:0097539 C ciliary transition fiber
FPKM:3.42 TPM:2.70
3040 A_BomoMG_comp18664_c0_seq1
428bp
 PREDICTED:_NAD-dependent_protein_deacetylase_sirtuin-6_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003682 F chromatin binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005731 C nucleolus organizer region
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007072 P positive regulation of transcription involved in exit from mitosis
GO:0009303 P rRNA transcription
GO:0016568 P chromatin organization
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0070403 F NAD+ binding
GO:0070932 P histone H3 deacetylation
GO:0070933 P histone H4 deacetylation
GO:0097372 F NAD-dependent histone deacetylase activity (H3-K18 specific)
FPKM:1.32 TPM:1.05
3041 A_BomoMG_comp18665_c0_seq1
288bp
 PREDICTED:_uncharacterized_protein_LOC106099826_[Papilio_polytes]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005634 C nucleus
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:2.38 TPM:1.88
3042 A_BomoMG_comp18666_c0_seq1
438bp
 hypothetical_protein_[Burkholderia_cepacia]
FPKM:1.92 TPM:1.51
3043 A_BomoMG_comp18667_c0_seq1
718bp
 PREDICTED:_Ca(2+)/calmodulin-responsive_adenylate_cyclase_[Bombyx_mori]
FPKM:2.21 TPM:1.75
3044 A_BomoMG_comp18668_c0_seq1
250bp
 PREDICTED:_uncharacterized_protein_LOC101743413_isoform_X2_[Bombyx_mori]
FPKM:3.26 TPM:2.58
3045 A_BomoMG_comp18670_c0_seq1
304bp
FPKM:1.90 TPM:1.50
3046 A_BomoMG_comp18671_c0_seq1
365bp
 hypothetical_protein_WG66_8110_[Moniliophthora_roreri]
FPKM:2.22 TPM:1.75
3047 A_BomoMG_comp186724_c0_seq1
301bp
 PREDICTED:_gastrula_zinc_finger_protein_XlCGF57.1-like_[Bombyx_mori]
FPKM:6.05 TPM:4.78
3048 A_BomoMG_comp18672_c0_seq1
318bp
 Hemicentin-1_[Operophtera_brumata]
GO:0005886 C plasma membrane
GO:0007155 P cell adhesion
GO:0016020 C membrane
GO:0030246 F carbohydrate binding
FPKM:1.74 TPM:1.38
3049 A_BomoMG_comp18673_c0_seq1
562bp
 PREDICTED:_uncharacterized_protein_LOC106131368_isoform_X2_[Amyelois_transitella]
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:2.60 TPM:2.05
3050 A_BomoMG_comp18673_c1_seq1
991bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101740145_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:1.58 TPM:1.25
3051 A_BomoMG_comp186748_c0_seq1
291bp
FPKM:6.22 TPM:4.91
3052 A_BomoMG_comp186751_c0_seq1
536bp
FPKM:2.96 TPM:2.34
3053 A_BomoMG_comp18675_c0_seq1
233bp
FPKM:1.30 TPM:1.03
3054 A_BomoMG_comp18676_c0_seq1
365bp
 PREDICTED:_trichoplein_keratin_filament-binding_protein_[Amyelois_transitella]
FPKM:1.02 TPM:0.81
3055 A_BomoMG_comp18678_c0_seq1
605bp
 Organic_cation_transporter_protein_[Operophtera_brumata]
GO:0005277 F acetylcholine transmembrane transporter activity
GO:0005329 F dopamine:sodium symporter activity
GO:0005333 F norepinephrine:sodium symporter activity
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006836 P neurotransmitter transport
GO:0008513 F secondary active organic cation transmembrane transporter activity
GO:0015651 F quaternary ammonium group transmembrane transporter activity
GO:0015695 P organic cation transport
GO:0015697 P quaternary ammonium group transport
GO:0015872 P dopamine transport
GO:0015874 P norepinephrine transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016323 C basolateral plasma membrane
GO:0022857 F transmembrane transporter activity
GO:0055085 P transmembrane transport
GO:0072488 P ammonium transmembrane transport
GO:1901374 P acetate ester transport
FPKM:1.62 TPM:1.28
3056 A_BomoMG_comp18679_c0_seq1
314bp
FPKM:1.12 TPM:0.88
3057 A_BomoMG_comp18679_c1_seq1
239bp
FPKM:2.84 TPM:2.24
3058 A_BomoMG_comp186805_c0_seq1
363bp
 olfactory_receptor_[Bombyx_mori]
FPKM:1.90 TPM:1.50
3059 A_BomoMG_comp186817_c0_seq1
781bp
FPKM:3.04 TPM:2.41
3060 A_BomoMG_comp18681_c0_seq1
205bp
 hypothetical_protein_RO3G_09087_[Rhizopus_delemar_RA_99-880]
FPKM:5.05 TPM:3.99
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